barSeed - Barley Seed Development Database

Probe CUST_35729_PI390587928

Source Contig U35_422

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35729_PI390587928	Hv_44K_v2	TCTTCATGGTGGATGACATGCCGATCAGGGACTTCAAGAACCTGGAGGGGAAGGGGATCG	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368228	1175	7e-23	447 - 506	98	59 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC29512 ABC40934
MLOC	AK358343	1089	7e-23	523 - 582	98	59 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673 ABC29512 ABC40934
MLOC	MLOC_62330.1	769	7e-23	682 - 741	98	59 / 60	plus	ABC02669 ABC02670 ABC02671 ABC02672 ABC02673
JLOC1	JLOC1_40788.1	789	4e-23	702 - 761	98	59 / 60	plus
Harvest21	ABC02675	683	3e-25	515 - 574	100	60 / 60	plus
Harvest21	ABC32777	378	1e-23	60 - 119	98	59 / 60	plus
Harvest21	ABC02670	1178	1e-23	510 - 569	98	59 / 60	plus	ABC02670
Harvest35	U35_422	699	3e-25	531 - 590	100	60 / 60	plus
Harvest35	U35_499	756	1e-23	60 - 119	98	59 / 60	plus
Harvest35	U35_411	1286	1e-23	543 - 602	98	59 / 60	plus

Contig Sequence (699 bp)

>U35_422 699 Hv_44K_v2
ACTCACACAAACACAATCTTCCTTCCATCCATCCAGCTTTGTCCTCATCAATCAACCTAG
CTAGCTTACGAAACGCATGGCTCGCATGGCGGTCTCGGTGCTTTCGATCCTCCTCGCCAC
TTGCGCCCTGGCGGCGGCGAGCTTCGACAAGGAGTTCGACGTTACCTGGGGTGACGGGCG
CGGCAAGATCCTCAACAATGGCCAGCTGCTGACGCTGGGCCTGGACAAGGTCTCCGGCTC
CGGGTTCCAGTCCAAGCACGAGTACCTCTTCGGCAAGATCGACATGCAACTCAAGCTCGT
CCCCGGCAACTCCGCCGGCACCGTAACCGCCTACTACCTGTCGTCGCAGGGTCCTACGCA
CGACGAGATCGACTTCGAGTTCCTGGGCAACGTCACCGGCGAGCCCTACACGCTGCACAC
CAACGTGTTCACGCAGGGGCAGGGCCAGCGGGAGCAGCAGTTCCGCCTCTGGTTCGATCC
CACCAACGACTTCCACACCTACTCCATCCTTTGGAACCCAAAGCACATCATCTTCATGGT
GGATGACATGCCGATCAGGGACTTCAAGAACCTGGAGGGGAAGGGGATCGCGTTCCCCAA
GAACCAGCCCATGCGGCTCTACTCCAGCCTCTGGAACGCGTCGGCCTTGAAGCCACGGTA
AGAGGCGGAGAACGGCGCGTGGGACCAGTCGGTCTTGAC

Homology of Contig U35_422 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	2e-116	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	2e-119
Arabidopsis v10	AT5G57550.1	284	5e-101	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284