barSeed - Barley Seed Development Database

Probe CUST_35719_PI390587928

Source Contig U35_432

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35719_PI390587928	Hv_44K_v2	CATTGCAATGATGCATGTTTTGGTCATTGTTGATTTCAGCTTAATGCTTATTGTTTGGAC	2168	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12446.5	1941	7e-23	1596 - 1655	98	59 / 60	plus	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
MLOC	MLOC_12446.3	1300	7e-23	1073 - 1132	98	59 / 60	plus	ABC00044 ABC00873 ABC43426 ABC49753
MLOC	MLOC_12446.4	1418	7e-23	1350 - 1409	98	59 / 60	plus	ABC00044 ABC00326 ABC00873 ABC43426 ABC49753
JLOC1	JLOC1_8350.2	2312	4e-23	1990 - 2049	98	59 / 60	plus
JLOC1	JLOC1_8350.1	2611	4e-23	2289 - 2348	98	59 / 60	plus
Harvest21	ABC00738	2236	3e-25	2158 - 2217	100	60 / 60	plus
Harvest21	ABC00691	1235	3e-25	31 - 90	100	60 / 60	minus
Harvest21	ABC00357	675	3e-25	23 - 82	100	60 / 60	minus
Harvest21	ABC00276	498	1e-24	23 - 81	100	59 / 59	minus
Harvest35	U35_34450	608	3e-25	267 - 326	100	60 / 60	plus
Harvest35	U35_432	2323	3e-25	2169 - 2228	100	60 / 60	plus

Contig Sequence (2323 bp)

>U35_432 2323 Hv_44K_v2
CTCTCCCGAGTCCGTCCGCAGCCGCCGCCAGCAGCTGCGCAAAGGGTCGACAAACCCTAA
CCCTAGCTTAGCTTAGCTTCCTTCTCGGCCGATCTAGAGCCATGGCGCCGACCAAGGGCG
AGGGGCCGGCCATCGGCATCGACCTCGGCACCACCTACTCGTGCGTCGGCGTGTGGCAGC
ACGACCGGGTCGAGATCATCGCCAACGACCAGGGCAACCGCACCACGCCCTCGTACGTCG
CCTTCACCGACTCGGAGCGCCTCATCGGCGATGCCGCCAAGAACCAGGTCGCCATGAACC
CCATCAACACCGTCTTCGATGCGAAGCGTCTTATTGGCAGAAGGTTTGCTGATGCCCCTG
TCCAGAGTGACATTAAGATGTGGCCGTACAAGGTTATTCCTGGCCCTGCAGACAAGCCTA
TGATCGTAGTGCAGTACAAGGGTGAGGACAAGCAGTTTTCTGCTGAAGAAATTTCTTCCA
TGGTCCTCATCAAGATGCGTGAGATCGCCGAGGCTTACCTAGGAGTAACTATTAAGAATG
CCGTTGTCACTGTGCCTGCTTACTTCAATGATTCCCAGAGGCAGGCAACCAAGGATGCTG
GTGTTATTGCTGGTCTTAATGTGATGCGTATCATCAACGAGCCAACAGCAGCTGCAATTG
CCTATGGTCTTGACAAGAAGGCTACCAGTGTCGGTGAGAAGAATGTGCTTATCTTTGACC
TCGGTGGCGGCACTTTTGATGTCTCTCTCCTCACTATTGAGGAGGGTATCTTTGAGGTGA
AGGCCACAGCTGGTGACACTCACCTTGGTGGGGAGGACTTTGACAACCGTATGGTGAACC
ACTTTGTCCAAGAGTTCAAGAGGAAGCACAAGAAGGATATCAGCGGAAACCCCAGGTCTT
TGAGGAGGCTCAGGACTTCATGTGAGAGGGCGAAGAGGACCCTTTCTTCCACTGCCCAAA
CCACCATCGAGATCGATTCACTCTTTGAGGGAGTTGATTTCTATTCCACCATCACCAGGG
CCAGGTTTGAGGAGCTCAACATGGACCTCTTCAGGAAGTGCATGGAGCCTGTGGAGAAGT
GTCTGAGGGATGCCAAGATGGACAAGAGCACCATCCATGATGTTGTCCTTGTCGGTGGTT
CCACCAGAATTCCCAGAGTTCAGCAGCTGCTGCAGGACTTCTTCAACGGGAAGGAGCTCT
GCAAGAGCATTAACCCTGATGAAGCTGTTGCCTATGGTGCTGCCGTCCAGGCTGCAATCC
TCAGCGGTGAGGGGAACGAGAAGGTGCAGGACCTTCTCCTCCTTGATGTCACCCCACTGT
CTCTTGGTCTTGAGACTGCCGGAGGAGTCATGACCGTGCTCATCACAAGGAACACCACCA
TTCCCACCAAGAAGGAGCAGGTCTTCTCCACCTACTCTGACAACCAGCCTGGTGTGCTCA
TCCAGGTGTTTGAGGGTGAGAGGACTAGGACCAGGGACAACAACCTTCTTGGCAAGTTTG
AGCTGTCCGGCATCCCGCCTGCACCCAGGGGTGTTCCTCAGATCACTGTTTGCTTTGACA
TTGATGCCAACGGTATCCTGAACGTCTCTGCTGAGGACAAGACCACCGGCCAGAAGAACA
AGATCACCATCACCAACGACAAGGGCAGGCTGAGCAAGGACGACATCGAGAAGATGGTCC
AGGACGCAGAGAAGTACAAGTCTGAGGACGAGGAGCACAAGAAGAAGGTTGACGCCAAGA
ACTCCCTGGAGAACTACGCCTACAACATGAGGAACACCATCCAGGACGAGAAGATTGCCT
CCAAGCTGCCTGCTGATGACAAGAAGAAGATCGAGGACGCCGTCGACGCCGCCATCCAGT
GGCTCGATGCCAACCAGCTCGGCGAGGTTGATGAGTTCGAGGACAAGATGAAGGAGCTGG
AGGGCCTCTGCAACCCCATCATTGCCAAGATGTACCAGGGTGCTGGTGCTGACATGCCCG
GAGGCATGGACGATGATGTGCCGGCTGCCAGCGGCGGTGCTGGGCCCAAGATCGAGGAGG
TCGACTAAGTTAGTTCTCTTTCATAGTGAGAAATACACTATACGCCATTTGTTTCGGCCC
TGGGTGCCAATCATATCACCTGGGTTGAAAATTTTGTTTAATCGTGAGACTAGTGTATCT
GTCTTAAACATTGCAATGATGCATGTTTTGGTCATTGTTGATTTCAGCTTAATGCTTATT
GTTTGGACTAAAAAAAAAAAAAAAAATTTCATTCTGAATCCTTAGATATCTGAATGTTGT
GCTAAAAAAAAAAAAAAAAATCAGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_432 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g60620.1	650	protein\|DnaK family protein, putative, expressed
Brachypodium v1_2	Bradi1g03720.1	649
Arabidopsis v10	AT5G02500.1	651	\| Symbols: HSC70-1, HSP70-1, AT-HSC70-1, HSC70 \| heat shock cognate protein 70-1 \| chr5:554055-556334 REVERSE LENGTH=651