barSeed - Barley Seed Development Database

Probe CUST_35675_PI390587928

Source Contig U35_14901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35675_PI390587928	Hv_44K_v2	GGGGATCAGTGTGCTTGTATTGCTTTTCAAAGATTTGTAATTTTGGTGTGTGTTTTGTAT	841	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.140	0.620	1.183	1.815	1.121	1.120
Raw	6.888	45.619	84.971	223.510	43.114	48.807

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250520.1	1076	3e-22	954 - 1012	98	58 / 59	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00603 ABC00704 ABC00970
MLOC	AK252186.1	920	3e-22	824 - 882	98	58 / 59	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00603 ABC00704 ABC00970
Harvest21	ABC00152	962	3e-25	838 - 897	100	60 / 60	plus	ABC00152
Harvest21	ABC00080	200	3e-25	56 - 115	100	60 / 60	minus
Harvest21	ABC00975	993	5e-23	70 - 128	98	58 / 59	minus
Harvest21	ABC00327	546	5e-23	69 - 127	98	58 / 59	minus	ABC00327
Harvest35	U35_14901	959	3e-25	842 - 901	100	60 / 60	plus
Harvest35	U35_14902	1011	5e-23	893 - 951	98	58 / 59	plus

Contig Sequence (959 bp)

>U35_14901 959 Hv_44K_v2
AGCCACTTCACACCAGAAATTCAGGCATGGCAGCTCCGAGAGCACTTGTCCTCGCCGTCC
TCCTGGCGGTCGTCTTCGCCAACGCCGAGGCGGCATCCGTCGTCGTCGGCCTGGCCAAGT
GCGCAGACTGCACCAGGAAGAACATCAAGGCCGAGGAAGCCTTCAAAGGTCTCCAGGTGG
CAGTCAAGTGCAAGAACGTCCACGGCGACTACGAGAGCAAGGCAGTGGGCGCCCTTGACA
GCACCGGCGCCTTCAGCGTACCCCTCGCCGCTGACCTTCATGGCGCCGACTGCGTCGCTC
AGCTCCACAGCGCCGCCTCCAACGCGCCGTGCCCCGGCCAGAAGCCATCTAAGATCGTCC
CGGTGTCCGAGGGCACCACCTTCGGCATCGTCGCCGGCGACAACGTTGTCATGCCGTCTG
CAGCGTCGCCGGAGTGCGCGTCCATGACCCTGTGCGGGCCCATCAAGAAACACATCATGG
AGCACTTCCACCACAAGAAGCCAGTGCCGCCGAAGCCGGAGCCCAAGCCCGAGCCACACC
CGGACAACGGCCCCGTGCCCAAGCCCGAGCCCAAGCCGCAACCCCACCCGGACTACCACC
CCGTCCCTCCCACGCCCACCTACGGCGGTGGCGGTGGCGGCGGATACCACGGACACCACT
GAGGCCACGCGACACTGAAATCTCATCACAGGGTCCATGATCCGTGAGTGATCGACGTTG
TTGCTATTTATGATCAGTTGCACATGCGTGGGTATTGTTTTGGTCTTGTGCCATTCGCTG
CTGCGTTATAGAATCTGCGCTGCAGAGTTGAGAGTCCGGAATAACAGTTGTGAGGAACAC
AGGGGATCAGTGTGCTTGTATTGCTTTTCAAAGATTTGTAATTTTGGTGTGTGTTTTGTA
TACGAAATTGTTATGGGATATCAAGTAAGTTAATCAAAAAAAAAAAAAAAAAAAGGGGG

Homology of Contig U35_14901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04630.1	203	9e-60
Arabidopsis v10	None