barSeed - Barley Seed Development Database

Probe CUST_35674_PI390587928

Source Contig U35_14902

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35674_PI390587928	Hv_44K_v2	GATCAGTGTGCTTGTATTGCTTTTCAAAGATTTGTAATTTCGGTGTGTGTTTTGTATACG	894	GeneList: purple MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.216	0.717	1.399	2.180	1.181	1.170
Raw	3.706	24.056	45.570	115.851	20.697	23.255

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250520.1	1076	2e-24	956 - 1015	100	60 / 60	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00603 ABC00704 ABC00970
MLOC	AK252186.1	920	2e-24	826 - 885	100	60 / 60	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00603 ABC00704 ABC00970
Harvest21	ABC00975	993	3e-25	67 - 126	100	60 / 60	minus
Harvest21	ABC00327	546	3e-25	66 - 125	100	60 / 60	minus	ABC00327
Harvest21	ABC00152	962	1e-23	841 - 900	98	59 / 60	plus	ABC00152
Harvest21	ABC00080	200	1e-23	53 - 112	98	59 / 60	minus
Harvest35	U35_14902	1011	3e-25	895 - 954	100	60 / 60	plus
Harvest35	U35_14901	959	1e-23	845 - 904	98	59 / 60	plus

Contig Sequence (1011 bp)

>U35_14902 1011 Hv_44K_v2
ATAATTCATTCATCCATCCATCGATCTGCCACTTCACAGTTCACACCAGCAGCAGTCAGC
TAATAATTCAGACATGGCAGCTACGAGAGCACTCGTCCTGGGCGTCCTGCTGGCGATCGC
CGTCGCCAATGCCGAGGCAACGTCCGTCGTCGTCGGCCTGGCCAAGTGCGCCGACTGCAC
AAGGAAGAACATCAAGGCCGAGGAAACCTTCAACGGTCTCCAGGTGGCGATCAAGTGCAA
GAACATCGATGGCCAGTACGAGAGCAAAGCGGTGGGTGCCCTGGATACCACCGGTGCCTT
CAGCGTGCCCCTGGCCACTGACCTCCACGGCGCTGACTGTGTCGCTCAGCTCCACAGCGC
CGCCTCCAACACGCCGTGCCCCGGCCAGGAACCATCCAAGATCGTGCCTGTTTCCGAGGG
CACCACCTTCGGCATCGTCGCCGGCGACAAGACCGCCACGCCGTCTGCAGCGTCGCCGGA
GTGCGCGTCCATGACCCTGTGCGGGCCCATCAAGAAACACATCATGGAGCACTTCCACCA
CAAGAAGCCCGTGCCGCCGAAGCCGGAGCCCAAGCCCCAGCCACACCCGGACTACGGCCC
CGTGCCCAAGCCCGAGCCCAAGCCGCAACCCCACCCGGACTACCACCCCGTCCCTCCCAC
GCCCACCTACGGCGGTGGCGGTGGCGGCGGATACCACGGACACCACTGAGCTAGTCCACG
CGACACTGAAATCTCATCACAGGTTCTATGATCAGTGAGTGATCGACGTTGTTGCTATTT
ATGATCAGTTGCATATGCGTGGGTATTGTTTTGGTCTTGTGCCATTCGCTGCTGCGTTTT
AGAATCTGCGCTGTGGAGTTGAGAGTCCAGAATAACGGTTGTGAGGAACACAGGGATCAG
TGTGCTTGTATTGCTTTTCAAAGATTTGTAATTTCGGTGTGTGTTTTGTATACGAAATTG
TTATGGGATATCAAGTAAGTTAATCAATCAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g05980.1	230	1e-53	protein\|POEI13 - Pollen Ole e I allergen and extensin family protein precursor, expressed
Brachypodium v1_2	Bradi5g04630.1	203	6e-66
Arabidopsis v10	None