barSeed - Barley Seed Development Database

Probe CUST_35673_PI390587928

Source Contig U35_14903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35673_PI390587928	Hv_44K_v2	GCAAGAAATTACTATGTATGAATCATGCTACAATCAAGTGCAAAGTATTCCCACCCAAAA	969	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.413	1.258	1.309	1.092	0.944	1.615
Raw	21.464	88.323	91.881	127.262	35.667	69.023

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251031.1	1127	3e-21	936 - 992	98	56 / 57	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
JLOC1	JLOC1_47574.1	1292	4e-23	1051 - 1107	100	57 / 57	plus
Harvest21	ABC32035	555	6e-22	475 - 531	98	56 / 57	plus
Harvest35	U35_14903	1042	3e-25	970 - 1029	100	60 / 60	plus
Harvest35	U35_36578	502	1e-23	75 - 131	100	57 / 57	minus

Contig Sequence (1042 bp)

>U35_14903 1042 Hv_44K_v2
CTGGACCGGTCCGGAATTCCTTTATACTGGGGCCTAATTCATCCATCAGCCACTTCACAC
AGGCAAGCAAGTGGCAGCGCGGCTCAGAGGTTCAGGCATGGCGGCTCCGAGAGCGCTCGT
CCTCGCCGTCCTGCTGGCGATCGCCGTCGCCAACGCCGAGCCGGCGTCCGTCGTCGTCGG
CCTGGCCAAGTGCGCCGACTGCACCAGGAAGAACATCAAGGCCGAGGAAGCCTTCAAGGG
TCTCCAGGTCGCGATCAAGTGCAAGAACGTCGACGGCGAGTACGAGAGCAAGGCGGTGGG
TGCCCTCGACGGCACCGGCGCCTTCAGCGTGCCCCTCGACGCTAACCTCCGCGGCGCCGA
CTGCGTCGCGCAGCTCCACAGTGCCGCCTCCAACGCGCCGTGCTCCGGCCAGGAGCCATC
CAAGATCGTGCCGGTTTCCGAGGGCACCACCTTCGGCATCGTCGCCGGCGACAACATTGC
CACGCCGTCTGCAGCGTCGCCGGAGTGCCAGTCCATGACCCTGTGCGGGCCCATCAAGAA
ACACATCATGGAGCACTTCCACCACAAGAAGCCCGTGCCACCGAAGCCGGAGCCCAAGCC
CCAGCCCCACCCAGACTACGGCCCGGTGCCCAAGCCGGAACCCAAGCCGCAGCCCCACCC
GGACTACCACCCCGTCCCTCCCACGCCCACCTACGGCGGCGGCGGCGGTGGCGGTGGATA
CCACGGTCACCACTGATTCCGTTCTACGACCGTCCAGCTAGCCCAGCACTGAAATCCCCA
TGGTTTCATGCTGAGTGACGTTGCTATTTATGATCGCCGCACGCGCGGTTGGTTTGGCCT
TTTATCATTCCCTACCACGTTTTCCAGTATTTGCAGAATGAATTCGGAATAACTGTTATG
ACGGTCAGGGGTCAGTGGGTGTCAGTTTTTTTTTTACCCAGGTTTGTAATATTTGTGTCA
TTTTGTGTAGCAAGAAATTACTATGTATGAATCATGCTACAATCAAGTGCAAAGTATTCC
CACCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g05990.2	185	8e-53	protein\|POEI14 - Pollen Ole e I allergen and extensin family protein precursor, expressed
Brachypodium v1_2	Bradi5g04630.1	203	5e-63
Arabidopsis v10	None