barSeed - Barley Seed Development Database

Probe CUST_35672_PI390587928

Source Contig U35_14904

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35672_PI390587928	Hv_44K_v2	GAATTTACCCCGAGTAACATCATATCATAATAAGCTACAACGATGTAATTTCTTCGTCAC	1052	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK354563	1022	2e-24	963 - 1022	100	60 / 60	plus	ABC00152 ABC00444 ABC00603 ABC00704 ABC41281
MLOC	MLOC_75012.1	1152	3e-22	1097 - 1152	100	56 / 56	plus	ABC00152 ABC00444 ABC00603 ABC00704 ABC41281
Harvest35	U35_14904	1129	3e-25	1053 - 1112	100	60 / 60	plus

Contig Sequence (1129 bp)

>U35_14904 1129 Hv_44K_v2
ACCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCTACGGGTC
GTCAACTTCTTTTCTCGGAGAAGAAAATCCATCCATCGGCTAGCCTGCTACTTCACCAAG
CAGCTCAGAGATTCAGACATGGCAGCTCCGAGAGCAGTCTTCCTCGGCGTCTGCGCCGTG
CTGCTAGCGGCCGCCGTCGCCAACGCAGAGGCGGCGTCCTTCGTGGTCGGCCAGGCCAAG
TGCGCCGGCTGCACCAGGAAGGACATGAACGCCGAGGAGGCCTTCAAGCGTCTCCGGGTG
GCGATCAAGTGCAGGGACGTCCACGGTGAGTACGAGAGTAAGGCGGTGGGCGGCCTCGAC
CGCACCGGCGCCTTCAGCGTGCCCCTGGCCGCCGACCTCCACGGCGCCGACTGCGTCGCC
CAGCTTCACAGCGCCGCCTCCAACGCGCCGTGCCCCGGCCAGGAGCCGTCCAAGGTCGTG
CCGGTGTCCGAGGGCGCCACATTCGGCGTCGTCCCCGGCGCCAAGACCGCCGCCACGCCG
TCGGTGGCGTCCCCGGAGTGCGCGTCGGCCCTGTGCAGCAAGACCAAAGGCGACATCGAG
AAGAAGAGCCACGGCGGCGGCCACCACAAGAGGAAGCACAACCCGCACAAGCCGGAGGCC
AAGGCCCAGCCGTAAACAGGCGTGCCCAAGCCGCCGGAGCCCCACCCGCCCAGCATTGAA
ATCCACATGATTTCGTTCTGTCACTGTTGCTATTTATGATTTCATTCAGTGTCTGCAGAA
CTCAGGAGAGTTCGGAATAACACGGTTGACTCATCCGTGTTATGAGAAGGACAGGCGGAT
CCGTGTGTGTGTGTGTCACAGTGTACCTTTTTTTTACAAATGTTTGTAATATCAGTGTGA
TTTTTCTGTGGGAAAAAAAAAAAAAAAAATAAATAAATCAAGTAATATAGCCGGTTTTGA
GGGTTCAGGGTTGAAACTTAGCCCGAGTTAGAGTTCAGAGCTGTACTATGGACTTCTCTG
TCGATCCACATGTCAATAGGTATTGCTCATACGAATTTACCCCGAGTAACATCATATCAT
AATAAGCTACAACGATGTAATTTCTTCGTCACAAAAAAAAAAAAAAAAA

Homology of Contig U35_14904 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04630.1	203	4e-51
Arabidopsis v10	None