barSeed - Barley Seed Development Database

Probe CUST_35671_PI390587928

Source Contig U35_14905

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35671_PI390587928	Hv_44K_v2	GGTGTGTTGCTTTATCAAGATTTTGTAACTTCGGTGTGTTTTCTCGTAGAAGATGTATTT	856	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK374445	935	2e-24	843 - 902	100	60 / 60	plus	ABC00152 ABC00327 ABC00444 ABC00603 ABC00704
Harvest35	U35_14905	1029	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (1029 bp)

>U35_14905 1029 Hv_44K_v2
ATTCATCCATCCATATCCATCCATCGAGCAGCCACTTCACATCACACCAGCAATTAAGTG
GCAGAAGTGCATGCGACCCAGAGGTTCGGGCATGGCAGCTCCGAGAGCGCTCGCCATCTG
CGTCCTGCTGGCGATCGCCGTCGCGAATGCCGAGGCGGCGTCCGTCGTCATCGGCCTGGC
CAAGTGCGCCGACTGCACCGGGAAGAACATCAAGGCCGAGGAAGCCTTCAAGGCTCTGCA
GGTGGCGATCAAGTGCAGGAACAGCGCCGGCGAGTACGAGAGCAAGGCGGTGGGCGCCCT
CGACGGCACCGGCGCCTTCAGCGTGCCCCTGGCCGCCGACCTCCACGGCGCCGACTGCGT
CGCGCAGCTCCACAGCGCCGCCTCCAACGCGCCGTGCCCCGGCCAGGAGCCATCCAAGAT
CGTGCCGGTGTCTGAGGGTACCACTTACGGCATCGTCGCCGGTGATAACACCGCCACGCC
GTCCGCGACGTCGCCGGAGTGCGCGTCGATGACCCTGTGCGGGCCCATCAAGAAGCACAT
CATGGAACACTTCCACCACAAAAAGCCCGTGCCGCCGAAGCCGGAGCCCAAGCCAGAGCC
CCACCCTGACTACGGCCCCGTGCCCAAGCCCGAGCCCAAGCCGCAGCCGCACCCGGACTA
CCACCCCGTCCCTCCCACCCCCACCTACGGCGGCGGCGGCGGCGGCGGATACCACGGACA
CCATTGAGTCCGATCTACGACCGACCTGCCCATTGGTGAAATCTCATCACCGAGTTCGTG
AGTGATCGACGTTGGTATTTATGATCAGTTTGCATGCTGTGCGCGTGTGTGTCAGGCTGA
GTGTGGGGGTGTGGTTGGTGTGTTGCTTTATCAAGATTTTGTAACTTCGGTGTGTTTTCT
CGTAGAAGATGTATTTATGAATCAAATAAGTGAATCAAGTGCATTTGTCAAAAAAAAAAA
AAAAAAAACTGTTTAGACATTGACATGATAAAGGCAATGTGATTTATTTATTTAAAAAAA
AAAAAAAAA

Homology of Contig U35_14905 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04630.1	203	5e-61
Arabidopsis v10	None