barSeed - Barley Seed Development Database

Probe CUST_35670_PI390587928

Source Contig U35_14906

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35670_PI390587928	Hv_44K_v2	GGTGTGTTGCTTTATCAAGATTTTGTAACTTCGGTGTGTTTTCTCGTACAAGAGATATTT	317	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.393	0.855	0.925	1.448	1.296	1.191
Raw	51.260	161.006	173.202	444.430	137.182	137.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359091	949	2e-24	853 - 912	100	60 / 60	plus	ABC00061 ABC00152 ABC00327 ABC00444 ABC00553 ABC00603 ABC00704 ABC00970
MLOC	MLOC_23962.1	339	2e-24	172 - 231	100	60 / 60	plus	ABC00603 ABC00704
MLOC	MLOC_48354.1	337	3e-21	113 - 166	100	54 / 54	minus	ABC00603
JLOC1	JLOC1_16521.1	446	8e-25	172 - 231	100	60 / 60	plus
JLOC1	JLOC1_31071.1	399	2e-21	175 - 228	100	54 / 54	minus
Harvest35	U35_14906	413	3e-25	318 - 377	100	60 / 60	plus
Harvest35	U35_14900	931	3e-25	821 - 880	100	60 / 60	plus

Contig Sequence (413 bp)

>U35_14906 413 Hv_44K_v2
CCCGTGCCGCCGAAGCCGGAGCCCAAGCCCCAGCCCCACCCGGACTACGGCCCCGTGCCC
AAGCCCGAGCCCAAGCCGCAGCCGCACCCGGACTACCACCCCGTCCCTCCCACGCCCACC
TACGGTGGCGGCGACGGCGGCGGCGGATACCACGGACACCACTGAGTCCGATCTACAACC
GACCTGCCCAGTGCTGAAATCTCATCACCGAGTTTGTGGTCTCTGTGACTGTGTGACAGT
GAGTGATCGACGTTGGTATTTATGATCAGTTTGCATGCTTTGCGCGTGTGTGTCAGGCTG
AGTGTGGGGGTGTGGTTGGTGTGTTGCTTTATCAAGATTTTGTAACTTCGGTGTGTTTTC
TCGTACAAGAGATATTTATGAATCAAATAAGTTAATGAAAAAAAAAAAAAAAA

Homology of Contig U35_14906 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None