- Probe CUST_35664_PI390587928
- Source Contig U35_14913
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35664_PI390587928 | Hv_44K_v2 | CATTCAATCCTCCGGTTGTTGTAATGTAATGATGGTCTGTTCCTTGTTCAGTGGGACACA | 388 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.244 | 0.687 | 1.824 | 1.550 | 0.790 | 1.121 |
| Raw | 3.871 | 24.722 | 55.787 | 74.382 | 12.901 | 21.346 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK362005 | 3522 | 2e-24 | 1874 - 1933 | 100 | 60 / 60 | plus | ABC02537 ABC47157 |
| MLOC | MLOC_61636.3 | 335 | 2e-24 | 220 - 279 | 100 | 60 / 60 | minus | ABC02537 |
| Harvest21 | ABC02527 | 526 | 3e-25 | 389 - 448 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14913 | 526 | 3e-25 | 389 - 448 | 100 | 60 / 60 | plus |
Contig Sequence (526 bp)
>U35_14913 526 Hv_44K_v2 GTAATTGCGCTGTCCGCACGCCTTTTTTTAGCTGATTTCCATTAGGGAGGTGGATATTTG CTTGAAAAATAAAATGGCCTGGTTGGTCTTATATTATCGCCTGTCGCTGTTGATAAGGTT GCACCAACCTAAAGCCCTTATTTGTTTCAAGAGGAGTCGCTTTATATTGTAATGGAGTTC TTTTATGGTAAACCCTGTGTGTGTAAATCACCGCACTTAGATTGGGCCAGTGTACTCCCC GAATAATTACTTACTGTATAAATTAGACTGTACATGCTTGCTAAGCAGTCATAATGACAA ACAATTTGAAGCTATCGCGTTGATGGTTAGTTGTTAGTTGAGACTTGATGTGTTAGGTCA GCATTGCTTTACAAAATCTACCTGTGTCCATTCAATCCTCCGGTTGTTGTAATGTAATGA TGGTCTGTTCCTTGTTCAGTGGGACACAGCAGGCCAGGAAAGGTTCAGGACAATAACGAG CAGTTACTACCGGGGAGCGCATGGAATCATTGTAGCCCTCATGGAT
Homology of Contig U35_14913 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |