barSeed - Barley Seed Development Database

Probe CUST_35541_PI390587928

Source Contig U35_43313

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35541_PI390587928	Hv_44K_v2	CAGGGCACCGCCCCCAGCTCCCGCGGCTCCGGCCGTCGTTACAGAGGCGCCGAAGGAGCC	217	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72047.1	2671	2e-24	1182 - 1241	100	60 / 60	minus	ABC18687
MLOC	MLOC_72047.3	2374	2e-24	917 - 976	100	60 / 60	minus	ABC18687
MLOC	MLOC_72047.2	2205	2e-24	894 - 953	100	60 / 60	minus	ABC18687
JLOC1	JLOC1_47925.2	2216	8e-25	1238 - 1297	100	60 / 60	plus
JLOC1	JLOC1_47925.1	1669	8e-25	691 - 750	100	60 / 60	plus
Harvest21	ABC39834	337	3e-25	218 - 277	100	60 / 60	plus
Harvest35	U35_43313	337	3e-25	218 - 277	100	60 / 60	plus

Contig Sequence (337 bp)

>U35_43313 337 Hv_44K_v2
CGACGGACGCGTACAAGGAGACGCACAACCTGGTGGTGTCGCCGCGGGACACGTACGTCG
GCGGCCTCGTGTCCAACCTGCAGGTGGCGGAGCTGATCGCGTGCGTGGCCAAGAACAGGA
GGGCGGCGTACTGCAAGGTGGTGGAGGTCGTTGCCGAGACCACCGCGCCGCTGCTGCCCA
CGGAGGACCTCCTCGCCAGGGTCCCCTCCGACCCCGGCAGGGCACCGCCCCCAGCTCCCG
CGGCTCCGGCCGTCGTTACAGAGGCGCCGAAGGAGCCGCCTCCAGCAGCGGCGGCGGCAC
CACCACCAGCCGCAACACCTTCGGCAACGGCAGCGGA

Homology of Contig U35_43313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None