barSeed - Barley Seed Development Database

Probe CUST_35523_PI390587928

Source Contig U35_14177

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35523_PI390587928	Hv_44K_v2	TGCAGTTGAATCCGTTTGATTCAAGTTCAGTTATACTCGGCCAGCGGTTTTTTCAAAAAA	844	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.263	1.419	1.114	0.930	0.347	0.413
Raw	167.095	303.851	202.954	270.642	34.453	45.050

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_13811.1	1356	5e-22	968 - 1022	100	55 / 55	plus
Harvest21	ABC01321	915	3e-25	845 - 904	100	60 / 60	plus	ABC01321
Harvest35	U35_14177	915	3e-25	845 - 904	100	60 / 60	plus

Contig Sequence (915 bp)

>U35_14177 915 Hv_44K_v2
GGCCCCCCCTCCTTCCTCCTCTCCCCCGCCCGTACGGTCAAACAAGAGACCCCCCACCCC
CCTCTCTCCTCCACCTCCAGTGCTCGCCGCGAGAAGCCGAGAAGGAAGAGCCTGAGAAGG
TTGCATCATGGCGGACCAACTCACCGACGACCAGATCGCCGAGTTCAAGGAAGCCTTCAG
CCTATTCGACAAGGACGGCGACGGTTGCATCACAACTAAGGAGCTGGGAACAGTCATGCG
TTCGCTGGGGCAGAACCCAACGGAGGCAGAGCTCCAGGACATGATCAACGAGGTGGATGC
AGACGGCAACGGCACTATCGACTTCCCGGAATTCCTCAACCTGATGGCTCGCAAGATGAA
GGACACCGACTCGGAGGAAGAGCTCAAGGAGGCTTTCCGGGTGTTCGATAAGGACCAGAA
CGGCTTCATCTCGGCCGCGGAGCTCCGCCACGTCATGACCAACCTCGGCGAGAAGCTAAC
GGACGAGGAGGTGGACGAGATGATCCGCGAGGCCGATGTCGACGGCGACGGGCAGATCAA
CTACGAGGAGTTCGTTAAGGTGATGATGGCCAAGTAATCCCGCCGATGTGCCGGTGGACG
GTGGTATTATTATTTACCGGGGAGGAGGAAATTGTGCTATGCATATTAGTAGTAAGGAAT
GCGGCTCTCGTTTCCTTGTCTTTGCCCCGAACCAGAAGAAGCGTACTAGTAGACGTAGTT
GCTGAAGAACATTCATGGAATCCTCCTCCCCTCCTGCTACCCTGTCTCTCTCCCGTGTGT
CATTGAAACATCTTTCTTTCTGTGTGAATCTGCAACACTTGGCCCCTTCGTGATGAACCC
TGATTGCAGTTGAATCCGTTTGATTCAAGTTCAGTTATACTCGGCCAGCGGTTTTTTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_14177 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48780.1	150	3e-101	protein\|OsCam1-2 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g10010.1	150	1e-101
Arabidopsis v10	AT3G43810.1	149	4e-101	\| Symbols: CAM7 \| calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149