barSeed - Barley Seed Development Database

Probe CUST_35466_PI390587928

Source Contig U35_14190

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35466_PI390587928	Hv_44K_v2	TTTCTCATCAACTTCTGCTTCGCTCTTCTATCTAGTATCAATGGAAAGCCGGTGTTTCGT	839	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_34485.3	831	2e-24	650 - 709	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
MLOC	MLOC_34485.1	1777	2e-24	1491 - 1550	100	60 / 60	plus	ABC01323 ABC01327 ABC01328 ABC01336 ABC01338 ABC01339 ABC01340
JLOC1	JLOC1_22241.3	844	8e-25	714 - 773	100	60 / 60	plus
JLOC1	JLOC1_22241.2	780	8e-25	650 - 709	100	60 / 60	plus
JLOC1	JLOC1_22242.2	4712	8e-25	3157 - 3216	100	60 / 60	minus
JLOC1	JLOC1_22242.1	4099	8e-25	2544 - 2603	100	60 / 60	minus
JLOC1	JLOC1_22241.1	3861	8e-25	1497 - 1556	100	60 / 60	plus
Harvest21	ABC01327	992	3e-25	816 - 875	100	60 / 60	plus	ABC01327
Harvest35	U35_14190	942	3e-25	840 - 899	100	60 / 60	plus

Contig Sequence (942 bp)

>U35_14190 942 Hv_44K_v2
TCGAGCACTGTTGGCCTACGGGCCACGCCACAGAACGCTCCCGGCCCCTTCCTCCCTCCC
TCCCTCTCCCTCCCCCGCTCTCGCGTCCGCGCTCGCTCGCTCGCTCGCTAGCCGCCTCCG
TCGGTCCACCGGGCCACCGCACCGCGGCGGCATGGCGGATCAGCTCACCGACGACCAGAT
CGCCGAGTTCAAGGAGGCCTTCAGCCTCTTCGACAAGGACGGAGATGGTTGCATCACCAC
CAAGGAGCTGGGAACAGTCATGCGCTCGCTGGGGCAGAACCCAACGGAGGCTGAGCTCCA
GGACATGATCAATGAAGTCGACGCTGATGGCAACGGCACCATTGACTTCCCAGAGTTCCT
CAACCTGATGGCCCGCAAGATGAAGGACACTGACTCAGAGGAGGAGCTCAAGGAGGCCTT
CAGGGTGTTCGACAAGGACCAAAACGGCTTCATCTCTGCTGCTGAGCTCCGCCACGTCAT
GACGAATCTCGGCGAGAAGCTCACCGACGAGGAGGTGGACGAGATGATCCGTGAAGCTGA
CGTCGACGGTGATGGCCAGATCAACTACGAGGAGTTCGTCAAGGTCATGATGGCCAAATG
AGCGCCGAATCGTGCTCCGAAGACAGGAGGAGAATTGTGCATTGCATATTAGTTTAAGAC
GAAACTCTTATTTGATCGATTTCCAGTTAAGCATCCTACCTAGCTGTAGCTGCTAAAACG
GATCGCACGACGCAATTCCTGCTATGCTCTCCAGTGTGTTTCCAGACCTCTTGTGTTTTA
TGTGAACTTGTGTCCTCCCTGGTGTATCCTGATTGCTGTTGGGCCCGTCTGTAGTATATT
TTCTCATCAACTTCTGCTTCGCTCTTCTATCTAGTATCAATGGAAAGCCGGTGTTTCGTA
AAAAAAAAAAAAAAAAAAAGATGTTAAAAAAAAAAAAAAAAG

Homology of Contig U35_14190 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48780.1	150	4e-101	protein\|OsCam1-2 - Calmodulin, expressed
Brachypodium v1_2	Bradi2g10010.1	150	2e-101
Arabidopsis v10	AT3G43810.1	149	6e-101	\| Symbols: CAM7 \| calmodulin 7 \| chr3:15664619-15666355 REVERSE LENGTH=149