barSeed - Barley Seed Development Database

Probe CUST_35421_PI390587928

Source Contig U35_31811

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35421_PI390587928	Hv_44K_v2	ACAGGGGCGGAGCAAATGCATCCTCTCACCGTGCTCCTCTCGATCCAAAGCAACCAAATC	47	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375204	1316	2e-24	107 - 166	100	60 / 60	plus	ABC01247
Harvest35	U35_31811	580	3e-25	48 - 107	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_31811 580 Hv_44K_v2
ATACTCCACCAGCTCTTACGAGCACAGCGCCACTATAAAGTTGAACCACAGGGGCGGAGC
AAATGCATCCTCTCACCGTGCTCCTCTCGATCCAAAGCAACCAAATCCCCCCACCGTCCT
CGAGAGATCGCGCCATGTCCGGATTCGGCTAGCACGGGCAGAACCCCCGTTTCTTCCTCA
AGGCCGACGGGGACTACTGCTTGTCCGTCCTCGACGGCAACGTCCTCCTCGCCCCTTCCG
ACCCCGGCGACGAGCGCCAGGAGCAGTTCATGTTCACGCGCATCGGCGCCCCGATCCAGG
ACGATGAGGGCAACCCCGCCTTCTACCTTGTGAGCAAGGCCAGCAGCCTCGGACCCCTAG
CTCTCAAGAACACCTTCGCACAATCCCATCCGATGGTGCTGGTGCATCTCGACCCCAACA
CCCTCGACGACTCTCTGATGTGGACGGAGACCGGCGACGTCGGCGACGGCTTCAGCTACA
TCCGCGCGCTGAACAAGACCAACACCCGCCTCAACAATGACGACGGCGGCGTGCAGGACG
GCACCACCGTCGTTGTCTCGGAAGGGGCAAGGGCGATTAC

Homology of Contig U35_31811 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None