barSeed - Barley Seed Development Database

Probe CUST_35390_PI390587928

Source Contig U35_31823

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35390_PI390587928	Hv_44K_v2	CGCTCCAGTAATCCATGGCCTCCGACCATCGCCTATACGCTCTCAAGGCCTTCGACGACA	12	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62020.1	1323	2e-24	76 - 135	100	60 / 60	plus	ABC13312
MLOC	MLOC_62020.2	1078	2e-24	42 - 101	100	60 / 60	plus	None
JLOC1	JLOC1_40567.1	1485	8e-25	108 - 167	100	60 / 60	plus
Harvest35	U35_31823	609	3e-25	13 - 72	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_31823 609 Hv_44K_v2
ACGGCACAAGCTCGCTCCAGTAATCCATGGCCTCCGACCATCGCCTATACGCTCTCAAGG
CCTTCGACGACACCAAGGCCGGCGTCAAAGGCCTCGTGGACGCGGGCGTCACCGCCGTCC
CCGCAATCTTTCACCACCCGCCGGAATCCCTCAACGACGCACCAACCCATCCCCATGGCC
ACCAGTTCGCCATCCCGGTCATCGACTTAGCCGGCCTCGTGACACCGTCCGGACGGGCCT
CCGTGGTCGGCGCGGTGACGGCGGCCGCGGAGACGGTGGGCTTCTTCCAGGTGGTGAACC
ACGGCGTGCCAGAGACGGCCATGTCGGGGATGCTCGCGGCGTTGCGGAGCTTCAACGAGG
AGCCGGCGGAGGCAAAGCGGCCGTACTACAGCCGGGACCCTGGCCGGCGCGCCAGGTATG
ATAGCAACTTCGACCTCTTCCAGTCGCGGGCGGCCAGCTGGCGCGACACCCTCTTCATGG
AGATGGCCCCGGAGCCGCCGCCGCCCGAGGAGATCCCGCCGGCGTGCAGGCGTGTGGCGC
CGGAGTACGTGGGGCTAGTGCAACGGCTGGGCCGCACGCTCTTCGAGCTGCTGTCGGAGG
CGATGGGAC

Homology of Contig U35_31823 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64280.1	370	3e-54	protein\|1-aminocyclopropane-1-carboxylate oxidase homolog 1, putative, expressed
Brachypodium v1_2	Bradi3g16110.1	358	9e-68
Arabidopsis v10	None