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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35388_PI390587928Hv_44K_v2CTACTACATCTGCCGCTTCCAGGAGCCCGGGGTGGCGGAGAAGGAGTTCGCGCCGGCGCA382GeneList: darkgrey
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.1930.3301.3832.1121.0571.113
Raw 23.33358.280222.114510.66093.295108.175



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36538514242e-24602 - 66110060 / 60plus ABC05553 ABC05554 ABC37826
MLOCAK36046214622e-24716 - 77510060 / 60plus ABC05553 ABC05554 ABC37826
MLOCMLOC_63331.213472e-24324 - 38310060 / 60plus ABC05553 ABC05554 ABC37826
JLOC1JLOC1_41466.253838e-252930 - 298910060 / 60plus
JLOC1JLOC1_41466.126208e-25325 - 38410060 / 60plus
Harvest21ABC0555314633e-25696 - 75510060 / 60plusABC05553
Harvest35U35_318244423e-25383 - 44210060 / 60plus
Harvest35U35_199618463e-25700 - 75910060 / 60plus



Contig Sequence (442 bp)

>U35_31824 442 Hv_44K_v2
GAGAGAGAGCTAGCGGAGACATGGCGGCAGCTGAGGCTCAGGGCGGTGGGGCGGCGGCGG
CGGGGGAGGAGGAGGGGGCGATCAGGCACAGGACGGTGACGGCTACGGCGGCACGGAGGC
GCCGGCCGACGTCGCGTCCTACACCGCCTTCCACGTCGTCGGCGACGCCGTCGCGCTGCT
CGACGCCCTCGCCATCCACAAGGTGTTCGTGGTGGGTCACGACTGGGGCGCCATCATCGC
GTGGTACCTGTGCCTCTTCCGGCCGGACCGGGTGACGGCGCTCGTCAACACCAGCGTCGC
CTTCATGCGCCACGTCTTCATCCGCGCCGGCGCCGGCGCCGTCAAGACCACCCGACTACT
TCAACCAAGCCTACGGCCCGACCTACTACATCTGCCGCTTCCAGGAGCCCGGGGTGGCGG
AGAAGGAGTTCGCGCCGGCGCA



Homology of Contig U35_31824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None