- Probe CUST_35264_PI390587928
- Source Contig U35_9633
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35264_PI390587928 | Hv_44K_v2 | CTGCGAAGGATTCTTGGTGTACTGCATGCACATTGGTCATTTATTAATTTCTTCTTATAA | 372 | GeneList: darkmagenta MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 5.040 | 3.342 | 1.185 | 0.478 | 0.269 | 0.292 |
| Raw | 126.418 | 137.434 | 41.901 | 26.219 | 3.567 | 5.070 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK375966 | 1391 | 2e-24 | 1302 - 1361 | 100 | 60 / 60 | plus | ABC19972 |
| MLOC | MLOC_11681.1 | 338 | 2e-24 | 114 - 173 | 100 | 60 / 60 | minus | ABC19972 |
| JLOC1 | JLOC1_7768.1 | 601 | 8e-25 | 360 - 419 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC19972 | 466 | 3e-25 | 373 - 432 | 100 | 60 / 60 | plus | ABC19972 |
| Harvest35 | U35_9633 | 466 | 3e-25 | 373 - 432 | 100 | 60 / 60 | plus |
Contig Sequence (466 bp)
>U35_9633 466 Hv_44K_v2 AGCGGCGCCCATCGCCCCGCCAGCGACAGCCCCCGCACCGGCGCCCATGTCACCGGCACC GGCACCGGCTCCGATCTTCGCCCCGACTCCGTCGCCCACGATGGCACCGGAGCCGGCGCC GACCATGGCGCCCGAGCTGTCGCCCATCATGGCCCCTTCGCTGTCCCCGCTCGGCTCGGC AGGCCCCGCGCTGGCGCCCGTGGCAGAGGAGGACTCGGCGGCCGGGAGCGCGCGCGCCGG CGTCGCCGCGCTCGCGGCGTTGGTTGCTGCCGGGCTCGTCGTCTTGTTTTAATTGATGGT TACTTTACTTTTGGTCATCTTGTTTACACGAGCGTGTTGTCCCCGCCGACGTTCCTCTGG GCGTCGCATGTACTGCGAAGGATTCTTGGTGTACTGCATGCACATTGGTCATTTATTAAT TTCTTCTTATAAATATATGGATGGGTGGGAAAAAAAAAAAAAAAAA
Homology of Contig U35_9633 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |