barSeed - Barley Seed Development Database

Probe CUST_35239_PI390587928

Source Contig U35_9661

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35239_PI390587928	Hv_44K_v2	ACATCACACTTTGAAGAGTATCTAAACGTCCAGGAAGCTGTTATGTTGGATCTTCTTACG	1114	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371709	2621	2e-24	1624 - 1683	100	60 / 60	plus	ABC12450
MLOC	MLOC_68460.2	1961	2e-24	956 - 1015	100	60 / 60	minus	ABC12450
MLOC	MLOC_68460.1	3035	2e-24	1005 - 1064	100	60 / 60	minus	ABC12425 ABC12450
MLOC	MLOC_68460.3	1944	2e-24	921 - 980	100	60 / 60	minus	ABC12450
JLOC1	JLOC1_45296.3	2552	8e-25	1497 - 1556	100	60 / 60	plus
JLOC1	JLOC1_45296.2	3503	8e-25	2448 - 2507	100	60 / 60	plus
JLOC1	JLOC1_45296.1	2576	8e-25	1521 - 1580	100	60 / 60	plus
Harvest21	ABC20297	1319	3e-25	1115 - 1174	100	60 / 60	plus
Harvest35	U35_9661	1319	3e-25	1115 - 1174	100	60 / 60	plus

Contig Sequence (1319 bp)

>U35_9661 1319 Hv_44K_v2
GCAAGATTCTTTGGTGCATAACTCGCACAGGAGGAACTACATGCCCATGCTTTATGTGCC
TTATAGATATCGGGCCTTGCGTGTTAGATCTTTTGCCTTGCCAGTTGCTTTGAAGGAAAT
TCCTTTGGTCAAGAGTGCGTCATCAGTATTGACTAGGTCATGCGACACTTTACTTGCAAA
TCCAGCTACTGCACTCGTGGTACCTGCAATTGGAATAATTTTATTTGCTCTATGGGGTTT
TTTGCCTCTAGTGAAGGACATCAGAAACCGTTTTGATCATGGAGGTAACTGGAAAAAGAG
CCCTACGTACCTAATTTCTACTTCCTACCTTCAACCTTTACTCCTTTGGACAGGAGCAAC
ACTTATCTGCAGGGGTTTGGATCCAGTCGTGTTACCTTCAGCAGCAAGCCAAGCTGTTAA
AACACGCCTTTTGACTTTTGTGAGATCATTATCGACTGTCCTGGCTACTGCATATATTCT
GACAAGCTTGATTCAGCAGATACAGAAATTTCTAGTGGATATAAGAAGCCCCAGTGACAC
ACGAGCTATGGGGTTGGATTTTACCATGAGAGCTGTTTATACTGGTATATGGATTGCTGC
TGTTTCTCTCTTTATGGAGTTGCTGGGTTTCAATACCCAGAAGTGGATAACTGCCGGAGG
TTTCGGGACAGTATTGCTTACGCTTGCTGGTCGTGAGATTTTTACGAATTTCCTCTCAAG
TGTTATGATCAATGCCACCCGCCCATTTGTAGTGAGTGAATGGATCAATGCAAAGATAGA
TGGTGTTGAGGTATCTGGTATTGTTGAGCATGTCGGCCTGTGGTCACCAACAATCATTAG
AGGCGATGACAGAGAAGCTATATACATTCCTAATCATAAATTCACAATGTCTATATTGAG
GAATAACACTCGGAGAAACCATTGGCGTATTAAGACATACCTTGCTATAAGCCACATGGA
TGCTGGAAAAATTGGTATAATTGTTGCAGACATGAGGAAAGTGTTGGCCAAGAATCATAA
CATAGAACAACAGAAGTTGCATAGGAGAGTATTTTTTGAAAAAATTGATCCAAAAACTCA
AGCCCTTATGATATACATATCCTGCTTTGTGAAGACATCACACTTTGAAGAGTATCTAAA
CGTCCAGGAAGCTGTTATGTTGGATCTTCTTACGATAGTTGGGCACCACAGGGCAAGGCT
TGCTACACAGATTCGAACAGTTCAGAAATCATATGGCAATGCAGACATTGACAACATTCC
TTTTGGAGAGGATACATATAGTCCTCGTGCACGTGGGCCGTCCGCTCCTGATCGATACT

Homology of Contig U35_9661 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g31839.1	1838	1e-146	protein\|transposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g15920.1	674	0.0
Arabidopsis v10	AT5G10490.1	673	2e-176	\| Symbols: MSL2 \| MSCS-like 2 \| chr5:3300376-3304005 REVERSE LENGTH=673