barSeed - Barley Seed Development Database

Probe CUST_35228_PI390587928

Source Contig U35_9672

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35228_PI390587928	Hv_44K_v2	AGGTTTTGTGCAAAATTATGCGATCTTCATGGGCTGATTCAGTTGCGAACGCCGAGGAAT	227	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248344.1	2552	2e-24	209 - 268	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.8	1123	2e-24	40 - 99	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.1	1163	2e-24	80 - 139	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.2	1163	2e-24	80 - 139	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.6	1479	2e-24	367 - 426	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.7	1536	2e-24	367 - 426	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.3	1330	2e-24	244 - 303	100	60 / 60	plus	ABC08634
MLOC	MLOC_5110.4	1330	2e-24	244 - 303	100	60 / 60	plus	ABC08634
JLOC1	JLOC1_3259.1	1614	8e-25	103 - 162	100	60 / 60	plus
Harvest21	ABC24057	544	3e-25	195 - 254	100	60 / 60	plus
Harvest35	U35_9672	577	3e-25	228 - 287	100	60 / 60	plus

Contig Sequence (577 bp)

>U35_9672 577 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGACCCGCAACCGCACCCGCAGCTTTTCCTCTTGCCCTCGTT
GCTTCCCTCCCCACCTTCCCCCTCCTTCAACCTTCGATCTCCCCCCGATTCTCTAGGGTT
TCTCCCGACACCCGCCCCCCGCAGCCACCCAGCCCCGCCGACCCCGGCCCGCCTCCTCCC
GCTCGCCCGCCGCAGGTTTTAGCGATCCGCCGTAGCACTTTCATCAAAGGTTTTGTGCAA
AATTATGCGATCTTCATGGGCTGATTCAGTTGCGAACGCCGAGGAATCGGCGCCCGCGAC
TGGTGCTGCTGCTGCCCCTGTTGCCAACCACCAGAACTCGCGTCCCACTCGCAGCTCTTA
CGTCCCTCCTCACCTCCGTGGTGGTGGCCGCTCGCCAGATAATCAGGTGCTAGCTGCAGG
CCCAACACCAGCTGGTGCATACCCCTCGGGTGCTGTGCAGCCTTCTGGTGGGTACGCAGC
CGCTGTTGGTGGCACTCGCTGGGCTGCCCCTCCTGGCGGCGGTAGCGCTGGCGTAGGTGT
TGTCCGCCAGGGTGGTGGTGGTGGACGTGGTGGTGTT

Homology of Contig U35_9672 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None