barSeed - Barley Seed Development Database

Probe CUST_35161_PI390587928

Source Contig U35_13970

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35161_PI390587928	Hv_44K_v2	CTGGATGTCTCGACAACTCACTACTACCATTTTACATATTGTGATATATATACACTGTAC	702	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251040.1	988	2e-24	716 - 775	100	60 / 60	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00969
MLOC	MLOC_33833.2	926	2e-24	713 - 772	100	60 / 60	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00969
MLOC	MLOC_33833.1	1336	2e-24	1027 - 1086	100	60 / 60	plus	ABC00093 ABC00181 ABC00200 ABC00395 ABC00969
JLOC1	JLOC1_21861.1	1467	8e-25	879 - 938	100	60 / 60	plus
Harvest21	ABC28870	425	3e-25	105 - 164	100	60 / 60	plus
Harvest21	ABC01002	785	3e-25	703 - 762	100	60 / 60	plus
Harvest21	ABC00872	974	3e-25	698 - 757	100	60 / 60	plus
Harvest21	ABC00395	988	3e-25	717 - 776	100	60 / 60	plus	ABC00395
Harvest35	U35_13970	785	3e-25	703 - 762	100	60 / 60	plus
Harvest35	U35_13938	1058	3e-25	719 - 778	100	60 / 60	plus

Contig Sequence (785 bp)

>U35_13970 785 Hv_44K_v2
GGCACGACAGCCATCTTCATCTTCCGTGCGGTTCCCAGGCCGTCTCCCCCGAGATCAGGC
GGAGCACGCCCGGGAGCGCCGAGACCCCGAGAGCCTCCGTCTCCACCACCCCGGAGCAGA
GATGGGGCTCACGTTCACCAAGCTGTTCAGCCGCCTCTTCGCCAAGAAGGAGATGAGGAT
TCTCATGGTTGGTCTCGATGCCGCTGGTAAGACCACCATCCTCTACAAGCTCAAGCTCGG
AGAGATCGTCACCACCATCCCAACCATCGGTTTTAATGTCGAAACTGTTGAATACAAGAA
CATCAGCTTCACTGTTTGGGATGTGGGGGGCCAAGACAAGATCAGGCCCCTGTGGAGGCA
CTACTTCCAGAATACGCAGGGCCTCATTTTTGTCGTCGACAGCAATGATAGGGAACGTGT
TGTTGAGGCTAGAGACGAGCTCCACAGGATGCTGAATGAGGATGAGCTGCGTGACGCTGT
GTTGCTTGTATTTGCGAACAAACAAGATCTTCCTAATGCGATGAATGCTGCTGAAATCAC
TGACAAGCTTGGCCTGCACTCTCTGCGCCAGCGGCACTGGTACATTCAGAGCACTTGCGC
GACATCTGGTGAAGGGTTGTACGAGGGACTTGACTGGCTCTCCAACAACATTGCCAACAA
GGCTTGAAGCGTATCGAGGACTGCTTCGAGGAATGAACGATGCTGGATGTCTCGACAACT
CACTACTACCATTTTACATATTGTGATATATATACACTGTACAACAGATAGTATGTGTGC
GTATG

Homology of Contig U35_13970 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g41060.1	182	3e-128	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi2g53077.1	362	4e-126
Arabidopsis v10	AT3G62290.1	181	5e-126	\| Symbols: ATARFA1E, ARFA1E \| ADP-ribosylation factor A1E \| chr3:23052287-23053545 FORWARD LENGTH=181