barSeed - Barley Seed Development Database

Probe CUST_35150_PI390587928

Source Contig U35_13978

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35150_PI390587928	Hv_44K_v2	GGCTCGTTTGTTGTATGAGCTGATTTTGCTAAACTATCTGAATGTTAATGTCGCAAAAAA	664	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356272	753	3e-22	677 - 732	100	56 / 56	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01146 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC47224 ABC49951
MLOC	MLOC_10557.1	1849	3e-22	1524 - 1579	100	56 / 56	minus	ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01136 ABC01146 ABC01147 ABC01154 ABC01161 ABC01166 ABC01167 ABC01177 ABC31617 ABC47224 ABC49951
JLOC1	JLOC1_6911.1	539	1e-22	214 - 269	100	56 / 56	minus
Harvest21	ABC01146	967	3e-25	897 - 956	100	60 / 60	plus	ABC01146
Harvest21	ABC01130	735	3e-25	665 - 724	100	60 / 60	plus
Harvest21	ABC01154	732	6e-22	664 - 723	97	58 / 60	plus	ABC01154
Harvest35	U35_14002	967	3e-25	897 - 956	100	60 / 60	plus
Harvest35	U35_13978	737	3e-25	665 - 724	100	60 / 60	plus

Contig Sequence (737 bp)

>U35_13978 737 Hv_44K_v2
GGCACTTCCGAGCGAAACACCTCACTCCCTCTCTCACCTCCGAAGCTCCAGCCGCAGCCA
TGGCCCCCAAGGCAGACAAGAAGCCGGCCGCCGAGAACAAGGTCGAGAAGGCGGCGGAGA
AGACCCCCGCGGGCAAGAAGCCCAAGGCCGAGAAGCGGCTGCCGGCGGGCAAGACTGCGT
CCAAGGAGGCCGGCGGCGAGGCGAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCCAAGA
AGAGCGTCGAGACGTACAAGATCTACATCTTCAAGGTGCTCAAGCAGGTCCACCCCGACA
TCGGCATCTCCTCCAAGGCCATGTCCATCATGAACTCCTTCATCAACGACATCTTCGAGA
AGCTCGCCGGCGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCA
GGGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCCGGCGAGCTCGCCAAGCACGCTGTCT
CCGAGGGCACCAAGGCAGTCACCAAGTTCACCTCCTCCTAGACTGCCGATGCGTGTGTTT
CCTGAAGTAACAGATGCCGTTGGTTGCTGTTATCTCCTCTTAGTGGTTGCTGACTCTGGT
TATCTATCTGCAAGTAGAAGTAGTCGTAGTTGTCTGAATGATGTATGGTTGCCAACACTT
TGTTGGCTCGTTTGTTGTATGAGCTGATTTTGCTAAACTATCTGAATGTTAATGTCGCAA
AAAAAAAAAAAAAAAAA

Homology of Contig U35_13978 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05630.1	154	3e-63	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	3e-69
Arabidopsis v10	AT3G46030.1	145	1e-56	\| Symbols: HTB11 \| Histone superfamily protein \| chr3:16913614-16914051 REVERSE LENGTH=145