- Probe CUST_35102_PI390587928
- Source Contig U35_13991
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35102_PI390587928 | Hv_44K_v2 | CTACCCTCATTTGAAATTTTCTACTTGGGTCAACTGTTTCGTTTATCAAATGTGTGCAAA | 596 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK361195 | 1082 | 3e-21 | 817 - 873 | 98 | 57 / 58 | plus | ABC01139 ABC01170 ABC01175 ABC31708 ABC36971 ABC48480 |
| JLOC1 | JLOC1_39050.1 | 1111 | 1e-23 | 825 - 882 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC01178 | 921 | 4e-24 | 806 - 863 | 100 | 58 / 58 | plus | |
| Harvest21 | ABC48480 | 259 | 6e-22 | 22 - 78 | 98 | 57 / 58 | minus | ABC48480 |
| Harvest21 | ABC31876 | 510 | 6e-22 | 425 - 481 | 98 | 57 / 58 | plus | |
| Harvest21 | ABC31708 | 606 | 6e-22 | 339 - 395 | 98 | 57 / 58 | minus | ABC31708 |
| Harvest35 | U35_13991 | 715 | 3e-25 | 597 - 656 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_34341 | 557 | 4e-24 | 187 - 244 | 100 | 58 / 58 | plus | |
| Harvest35 | U35_36668 | 510 | 6e-22 | 425 - 481 | 98 | 57 / 58 | plus | |
| Harvest35 | U35_13977 | 987 | 6e-22 | 720 - 776 | 98 | 57 / 58 | minus |
Contig Sequence (715 bp)
>U35_13991 715 Hv_44K_v2 CCTCGTCCGCCAGAAGATGAAGTACCTCCGCTTCCTCCGCAAGAGGATGNACACCAAGCC ATCCCACGGCCCCATCCACTTCCGCGCCCCGGCCAAGATCCTCTGGCGCACCATCCGCGG TATGATTCCGCACAAGACCGCGAGGGGCGAGGCCGCACTTGCCAGGCTCAAGGCGTACGA GGGTGTGCCGCCGCCGTACGACAGGACCAAGCGCATGGTCATCCCCGACGCGCTCAAGGT TCTGAGGCTGCAGCCCGGGCACAGGTACTGCCTCCTGGGCCAGCTCTCCAAGGAGGTCGG ATGGAACTACGCCGACACCATCAGGGAGCTGGAGGAAAAGAGGAAGGAGAAGGCCAAGGT CTCGTACGACAGGAGAAAGCAGCTGGCGAAGCTCCGCGTCAAGGCCGAGAAGGCAGCCGA GGAGAAGTTGGGAACTCAGCTGGAGATCCTGGCCCCGATCAAATACTAAGAGAGATCAGA GCTTTTGTGCGCCATCAGTTTTGGGAAACCTCTGTCCTCCTCTTGTCTTTAAGTAGTTTG GTAACTCTGTGTTAGTACAACCTGGTTGGTAAACCTTTGTTATGCATGCAGTTCTGCTAC CCTCATTTGAAATTTTCTACTTGGGTCAACTGTTTCGTTTATCAAATGTGTGCAAAAAAA AAAAAAAAAAATTCTTGTGAATGTCTATCAGGTGATTATAAAAAAAAAAAAAAAA
Homology of Contig U35_13991 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g54890.1 | 207 | 8e-92 | protein|ribosomal protein L13, putative, expressed |
| Brachypodium v1_2 | Bradi1g08260.1 | 207 | 9e-93 | |
| Arabidopsis v10 | AT5G48760.1 | 206 | 2e-80 | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206 |