barSeed - Barley Seed Development Database

Probe CUST_35087_PI390587928

Source Contig U35_13997

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35087_PI390587928	Hv_44K_v2	CTCTTAGTGGTTGCTGACTCTGGTTATCTATCTGCAAGTAGAAGTAGTCGTAGTTGTCTG	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356272	753	2e-24	589 - 648	100	60 / 60	plus	ABC01121 ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01128 ABC01129 ABC01131 ABC01132 ABC01133 ABC01136 ABC01137 ABC01138 ABC01140 ABC01141 ABC01142 ABC01143 ABC01146 ABC01147 ABC01150 ABC01151 ABC01154 ABC01156 ABC01157 ABC01158 ABC01161 ABC01162 ABC01164 ABC01166 ABC01167 ABC01169 ABC01177 ABC01179 ABC01180 ABC01181 ABC01184 ABC16131 ABC30555 ABC31601 ABC31617 ABC31619 ABC31825 ABC37479 ABC47224 ABC49951
MLOC	MLOC_10557.1	1849	2e-24	1608 - 1667	100	60 / 60	minus	ABC01122 ABC01123 ABC01124 ABC01125 ABC01127 ABC01136 ABC01146 ABC01147 ABC01154 ABC01161 ABC01166 ABC01167 ABC01177 ABC31617 ABC47224 ABC49951
JLOC1	JLOC1_6911.1	539	8e-25	298 - 357	100	60 / 60	minus
Harvest21	ABC01154	732	3e-25	576 - 635	100	60 / 60	plus	ABC01154
Harvest21	ABC01146	967	3e-25	809 - 868	100	60 / 60	plus	ABC01146
Harvest21	ABC01130	735	3e-25	577 - 636	100	60 / 60	plus
Harvest35	U35_14002	967	3e-25	809 - 868	100	60 / 60	plus
Harvest35	U35_13997	635	3e-25	576 - 635	100	60 / 60	plus
Harvest35	U35_13978	737	3e-25	577 - 636	100	60 / 60	plus

Contig Sequence (635 bp)

>U35_13997 635 Hv_44K_v2
CCACCTCCGAGCGAAACACCTCACTCCCTCTCTCACCTCCGAAGCTCCAGCCGCAGCCAT
GGCCCCCAAGGCAGACAAGAAGCCGGCCGCCGAGAACAAGGTGGAGAAGGCAGCAGAGAA
GACCCCGGCAGGCAAGAAGCCCAAGGCCGAGAAGCGGCTACCGGCGGGCAAGACGGCCTC
CAAGGAGGCCGGCGGCGAGGCGAAGACGAGGGGCCGGAAGAAGGGCAGCAAGGCCAAGAA
GAGCGTGGAGACGTACAAGATCTACATCTTCAAGGTGCTGAAGCAGGTCCACCCCGACAT
CGGCATCTCCTCCAAAGCCATGTCCATCATGAACTCCTTCATCAATGACATCTTCGAGAA
GCTCGCCGGGGAGTCGGCCAAGCTCGCCCGCTACAACAAGAAGCCCACCATCACCTCCAG
GGAGATCCAGACCTCCGTCCGCCTCGTCCTCCCTGGCGAGCTCGCCAAGCACGCTGTCTC
CGAGGGCACCAAGGCAGTCACCAAGTTCACCTCCTCCTAGACTGCCGATGCGTGTGTTTC
CTGAAGTAACAGATGTGGTTGGTTGCTGTTATCTCCTCTTAGTGGTTGCTGACTCTGGTT
ATCTATCTGCAAGTAGAAGTAGTCGTAGTTGTCTG

Homology of Contig U35_13997 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g05630.1	154	1e-63	protein\|Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g27760.1	154	9e-70
Arabidopsis v10	AT3G46030.1	145	3e-57	\| Symbols: HTB11 \| Histone superfamily protein \| chr3:16913614-16914051 REVERSE LENGTH=145