- Probe CUST_35081_PI390587928
- Source Contig U35_24720
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35081_PI390587928 | Hv_44K_v2 | AAGGCCGGTATATTCGATAAGCTGCACAACTTCGTGATTTATTATTCAAATCATCAAACG | 415 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_75498.2 | 2515 | 2e-24 | 2454 - 2513 | 100 | 60 / 60 | plus | ABC12425 ABC19689 |
| MLOC | MLOC_75498.1 | 2809 | 2e-24 | 11 - 70 | 100 | 60 / 60 | minus | ABC12425 ABC19689 |
| JLOC1 | JLOC1_50366.13 | 2538 | 8e-25 | 2451 - 2510 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.12 | 2077 | 8e-25 | 1990 - 2049 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.11 | 1759 | 8e-25 | 1672 - 1731 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.10 | 2808 | 8e-25 | 2721 - 2780 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.9 | 2538 | 8e-25 | 2451 - 2510 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.8 | 2987 | 8e-25 | 2900 - 2959 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.7 | 1677 | 8e-25 | 1590 - 1649 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.6 | 3230 | 8e-25 | 3143 - 3202 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.5 | 2108 | 8e-25 | 2021 - 2080 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.4 | 1422 | 8e-25 | 1335 - 1394 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.3 | 2271 | 8e-25 | 2184 - 2243 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.2 | 2995 | 8e-25 | 2908 - 2967 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_50366.1 | 1883 | 8e-25 | 1796 - 1855 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC19689 | 494 | 3e-25 | 20 - 79 | 100 | 60 / 60 | minus | ABC19689 |
| Harvest35 | U35_24720 | 494 | 3e-25 | 416 - 475 | 100 | 60 / 60 | plus |
Contig Sequence (494 bp)
>U35_24720 494 Hv_44K_v2 ACTGATGCGTCGTCCNTGAAAGAACTATGTGAGTTTAAGCTAGCAGAGACAGTAAATAGG TCGAACGCTCGGCTAATAGAAGACGTCGCATCACGAACCGGGGCTGATGCATTGGCACGC CTGTGTGAGAAATTAAGGGAACATTTGGTTGAGCAAGGAGACTCTGAGCTCGTGGAAATG CACATGGTTGAGGAGATCGAGGCCAAAGCCGGTTAGGATGCGGTCTTGGTTCCATTTCGC CATACACATTAATTCAAGCATTGGCCGTGTTGTATTTCACGGGAAGTAGCAATTGTTTTC TACTTGACTGAAACCTCATTTGTGGTCTCCCAAGTGTGTAACCACGGAGTGGAGGCTCTG TAATCATGAAACATGTATACGTTGGGAACTGCATGAAATTATACCTGCAACTTACAAGGC CGGTATATTCGATAAGCTGCACAACTTCGTGATTTATTATTCAAATCATCAAACGTTAAA AAAAAAAAAAAAAA
Homology of Contig U35_24720 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |