barSeed - Barley Seed Development Database

Probe CUST_35064_PI390587928

Source Contig U35_12750

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35064_PI390587928	Hv_44K_v2	AGGGAGGGTCACGCAAGTACCATCTTACATGCAATTGGCTAAGATATTTCAAGAACGACA	347	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366758	2973	2e-24	882 - 941	100	60 / 60	plus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.1	3685	2e-24	2023 - 2082	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.9	2786	2e-24	1913 - 1972	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.4	2864	2e-24	2011 - 2070	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.6	3701	2e-24	2005 - 2064	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.2	3022	2e-24	2017 - 2076	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.3	3018	2e-24	2018 - 2077	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.5	3201	2e-24	2011 - 2070	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
MLOC	MLOC_55517.7	3002	2e-24	2005 - 2064	100	60 / 60	minus	ABC06783 ABC13494
MLOC	MLOC_55517.8	3709	2e-24	1992 - 2051	100	60 / 60	minus	ABC06783 ABC13494 ABC49746
JLOC1	JLOC1_35821.16	2989	8e-25	972 - 1031	100	60 / 60	plus
JLOC1	JLOC1_35821.15	2928	8e-25	975 - 1034	100	60 / 60	plus
JLOC1	JLOC1_35821.14	3066	8e-25	942 - 1001	100	60 / 60	plus
JLOC1	JLOC1_35821.13	3071	8e-25	947 - 1006	100	60 / 60	plus
JLOC1	JLOC1_35821.12	2940	8e-25	816 - 875	100	60 / 60	plus
JLOC1	JLOC1_35821.11	2912	8e-25	788 - 847	100	60 / 60	plus
JLOC1	JLOC1_35821.10	2901	8e-25	777 - 836	100	60 / 60	plus
JLOC1	JLOC1_35821.9	2820	8e-25	803 - 862	100	60 / 60	plus
JLOC1	JLOC1_35821.8	3687	8e-25	1670 - 1729	100	60 / 60	plus
JLOC1	JLOC1_35821.7	3761	8e-25	1637 - 1696	100	60 / 60	plus
JLOC1	JLOC1_35821.6	3681	8e-25	1664 - 1723	100	60 / 60	plus
JLOC1	JLOC1_35821.5	3761	8e-25	1637 - 1696	100	60 / 60	plus
JLOC1	JLOC1_35821.4	2967	8e-25	843 - 902	100	60 / 60	plus
JLOC1	JLOC1_35821.3	2901	8e-25	777 - 836	100	60 / 60	plus
JLOC1	JLOC1_35821.2	2546	8e-25	422 - 481	100	60 / 60	plus
JLOC1	JLOC1_35821.1	2384	8e-25	367 - 426	100	60 / 60	plus
Harvest21	ABC25637	565	3e-25	348 - 407	100	60 / 60	plus
Harvest35	U35_12750	566	3e-25	348 - 407	100	60 / 60	plus

Contig Sequence (566 bp)

>U35_12750 566 Hv_44K_v2
AATTCCTGGAATGGTGCTAAGTTCACGAAAGCAATAGTTAGGTTTCTATTTCTACAAGCT
TTAACAAGAGAGGTATTTTACTGCATTTTTGGCGTATGGAGGTTCCAATCTAGTCTTGGC
AGCAGCAGCTGCAGCAATATGTGCTTACATTGCACCTGCAGCTGCTGGATCTGGTATTCC
CGAAGTTAAAGCATATCTTAACGGAGTCGATGCTTATTCTATACTGGCTCCTAGTACACT
TTTTGTGAAGATATTTGGTTCAATACTTGGAGTTTCAGCCGGATTTGTACTTGGAAAGGA
AGGTCCAATGGTACATACGGGGGCGTGCATTGCAAACTTACTTGGTCAGGGAGGGTCACG
CAAGTACCATCTTACATGCAATTGGCTAAGATATTTCAAGAACGACAGGGATAGGCGGGA
TTTGATTACATGTGGGTGCGCAGCTGGAGTGGCCGCTGCCTTCCGCGCACCTGTTGGTGG
CGTCCTGTTTGCTCTTGAGGAAGCAGCATCATGGTGGCGAAGTGCTCTTTTATGGAGAGC
ATTCTTTACAACTGCTGTTGTTGCTG

Homology of Contig U35_12750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g35190.1	805	2e-79	protein\|chloride channel protein, putative, expressed
Brachypodium v1_2	Bradi3g45940.1	809	3e-82
Arabidopsis v10	AT5G49890.1	779	4e-72	\| Symbols: CLC-C, ATCLC-C \| chloride channel C \| chr5:20288489-20292143 REVERSE LENGTH=779