barSeed - Barley Seed Development Database

Probe CUST_35060_PI390587928

Source Contig U35_12756

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35060_PI390587928	Hv_44K_v2	AATCCTCTGATGTGAAGAGAGAGGCAATAGAATCAGCAGGTAAAGAGCTGGTTCCAGTTG	520	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70044.5	2653	2e-24	1081 - 1140	100	60 / 60	minus	ABC11831
MLOC	MLOC_70044.1	3087	2e-24	1087 - 1146	100	60 / 60	minus	ABC11831
MLOC	MLOC_70044.6	3028	2e-24	1077 - 1136	100	60 / 60	minus	ABC11831
MLOC	MLOC_70044.2	3160	2e-24	1087 - 1146	100	60 / 60	minus	ABC11831
MLOC	MLOC_70044.3	3084	2e-24	1084 - 1143	100	60 / 60	minus	ABC11831
MLOC	MLOC_70044.4	2630	2e-24	1084 - 1143	100	60 / 60	minus	ABC11831
JLOC1	JLOC1_46451.7	2943	8e-25	1801 - 1860	100	60 / 60	plus
JLOC1	JLOC1_46451.6	2807	8e-25	1662 - 1721	100	60 / 60	plus
JLOC1	JLOC1_46451.5	2804	8e-25	1662 - 1721	100	60 / 60	plus
JLOC1	JLOC1_46451.4	2777	8e-25	1632 - 1691	100	60 / 60	plus
JLOC1	JLOC1_46451.3	2765	8e-25	1620 - 1679	100	60 / 60	plus
JLOC1	JLOC1_46451.2	2741	8e-25	1599 - 1658	100	60 / 60	plus
JLOC1	JLOC1_46451.1	2661	8e-25	1519 - 1578	100	60 / 60	plus
Harvest21	ABC26199	592	3e-25	521 - 580	100	60 / 60	plus
Harvest35	U35_12756	594	3e-25	521 - 580	100	60 / 60	plus

Contig Sequence (594 bp)

>U35_12756 594 Hv_44K_v2
ACAGCACACATAAGGGCGGGAAAGTTGAATTCTACCTCATCCTTCAATTCATATGATCAG
ATACAAAACACTTCCAATGCATCACATGTAAGTCCTTCATTGCTTGCAAGGCTACACGTG
ACGGAAGATGAAAATAAGGCCATGAAGGAATCTCTTTCTAGAAAGGATGGTGAACTTCAG
CTTTCACGTACCATGCTTGCTCGCACAACCTCTAAACTTTCCCAAGTTGAAGCTCAACTC
GAAGACTTATCAGGTGATCGAGCTACCACAGAACTGGTAAAAAGAAGTCCTACAGTGGTT
GAAAATTCTCTTTCATCTATCTCTGAGGGTGGTCGCAATGAAGATAATGTCAGCTGTTCA
GGTTCATGGGCGTCAGCCTTGATTTCTGAACTTGAACATTTCAAGAAGGGAAAGCTGACT
ACACCTTCTTGTAAGAGCACAGGAATGTCAGACTTAAGTTTCATGGATGACTTTGAAGAA
ATAGAAAGGCTAGCTATGGTATGTGATGATAAGCCTTCAAAATCCTCTGATGTGAAGAGA
GAGGCAATAGAATCAGCAGGTAAAGAGCTGGTTCCAGTTGATGGTCCCAATGAG

Homology of Contig U35_12756 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g55570.1	917	1e-89	protein\|plant protein of unknown function DUF869 domain containing protein, expressed
Brachypodium v1_2	Bradi5g24090.2	909	2e-92
Arabidopsis v10	None