barSeed - Barley Seed Development Database

Probe CUST_35046_PI390587928

Source Contig U35_36712

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35046_PI390587928	Hv_44K_v2	AAATCTCATCAATTTGGCGGTACAGGGAGGGGGGCAAGAAAGAAAGAATCCGAGGCGAAC	93	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360797	1122	2e-24	983 - 1042	100	60 / 60	minus	ABC00179 ABC00609
MLOC	MLOC_68309.2	1480	2e-24	1201 - 1260	100	60 / 60	minus	ABC00179 ABC00609
MLOC	MLOC_68309.1	674	2e-24	576 - 635	100	60 / 60	minus	ABC00179 ABC00609
JLOC1	JLOC1_45185.2	908	8e-25	576 - 635	100	60 / 60	minus
JLOC1	JLOC1_45185.1	1434	8e-25	1201 - 1260	100	60 / 60	minus
Harvest21	ABC00609	928	3e-25	777 - 836	100	60 / 60	minus	ABC00609
Harvest21	ABC00179	474	3e-25	322 - 381	100	60 / 60	minus	ABC00179
Harvest35	U35_36712	474	3e-25	94 - 153	100	60 / 60	plus
Harvest35	U35_14056	934	3e-25	777 - 836	100	60 / 60	minus

Contig Sequence (474 bp)

>U35_36712 474 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGAGACAGATCTATGATTAAACAAGGATGGCATAATACAAT
GAAGGGGAGTAATGATAAATAAAAATATAAATCAAATCTCATCAATTTGGCGGTACAGGG
AGGGGGGCAAGAAAGAAAGAATCCGAGGCGAACGAACGCGCGTGAGCGGGGCTACACAGG
AGAGGCCGGCCCGTCCGGCCAGTTAGAAAAAAATACAGACAGCACAAAATGCGGTGGCGC
GCAAAGACGGACAGCTCGTCCGAAAGAGGCCCGGTGCGTGCATGATTGCGTGTCCTCGTG
GCGGGCCTTGACGGGGCCGGGGGCCGGGCCGGACCTCCCCGCGCACCGGCGACATGGCCC
GCACCAAGCAGACGGCGAGGAAGTCCACCGGTGGCAAGGCGCCGAGGAAGCAACTGGCCA
CCAAGGCCGCCCGCAAGTCCGCCCCGGCCACCGGCGGCGTAAAGAAGCCCCACC

Homology of Contig U35_36712 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None