barSeed - Barley Seed Development Database

Probe CUST_35043_PI390587928

Source Contig U35_36715

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35043_PI390587928	Hv_44K_v2	TTAAGTTACAATCAAATAACATTTATGCAGCATGTGGATCTTGAGCCTGTGCGCACTGAA	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248762.1	1793	2e-24	495 - 554	100	60 / 60	plus	ABC15789 ABC19664
MLOC	MLOC_16752.5	1350	2e-24	1043 - 1102	100	60 / 60	minus	ABC15789 ABC19664
MLOC	MLOC_16752.3	1488	2e-24	1213 - 1272	100	60 / 60	minus	ABC15789 ABC19664
MLOC	MLOC_16752.2	1492	2e-24	1189 - 1248	100	60 / 60	minus	ABC15789 ABC19664
JLOC1	JLOC1_11564.2	1768	8e-25	193 - 252	100	60 / 60	plus
JLOC1	JLOC1_11564.1	1660	8e-25	81 - 140	100	60 / 60	plus
Harvest21	ABC31970	629	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_36715	629	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_36715 629 Hv_44K_v2
TGTAATGGGCACGAGGGCAAAGCAGAGCGGCGTCTCCTGTTACCCAGCAAGCACAGCAGT
GGAGTCAAGCCTCAGTCGTCTCCCCTGCTCCGCCGCCGCCGCCGCCGGCGATGGCGCGCA
ACCCCTGCGACATCCGCATCCTCCTCGTCGCCGCCGCCGTCGCCTTCATCTACATCCAAG
TGCGGCTGTTTTCCACCCAGTCGTCTAATTCCCACGACGCCGGACGCCTCGCGGAAGCAG
AGAAATGCGAGAGCCAGCTGCACGCCATGATCGATCAGGTCAGCGCACAGCAGGAGAAGA
TCGCCGCACTCGAAGAGATGAAGGTACGCCAAGACGAGGAGCGCGTGCAGCTCAAGATTT
TGATCCAGGATCTTGAAAAAAGGAGTTTACAGACCTTAATAGACAAGAACGTGGTTCCTG
TCGCCGCTGTTGTCATAATGGCTTGCAATCGACCAGACTATTTGCAGAGGACAGTGGAAT
CTATCCTCAAGTATCAGAAAGCAGTTGCTTCAAAGTTTCCACTATTTATATCACAGGATG
GAACAAATGGAGAAGTAAAAAAGAAAGCTTTAAGTTACAATCAAATAACATTTATGCAGC
ATGTGGATCTTGAGCCTGTGCGCACTGAA

Homology of Contig U35_36715 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g58590.1	449	2e-82	protein\|N-acetylglucosaminyltransferase I, putative, expressed
Brachypodium v1_2	Bradi3g60820.3	364	1e-93
Arabidopsis v10	AT4G38240.1	444	7e-60	\| Symbols: CGL1, CGL, GNTI \| alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase, putative \| chr4:17932006-17935209 REVERSE LENGTH=444