barSeed - Barley Seed Development Database

Probe CUST_3503_PI390587928

Source Contig U35_18192

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3503_PI390587928	Hv_44K_v2	TCACATTGTGCTTTACCGAACTTCATTACTACATCGTTGACAGTGCTATTTTCTCAAATT	3	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6125.3	1762	7e-23	9 - 65	100	57 / 57	minus	ABC09536 ABC44079
MLOC	MLOC_6125.1	2431	7e-23	15 - 71	100	57 / 57	minus	ABC09536 ABC44079
MLOC	MLOC_6125.2	2270	7e-23	15 - 71	100	57 / 57	minus	ABC09536 ABC44079
MLOC	MLOC_6125.4	1351	7e-23	9 - 65	100	57 / 57	minus	ABC09536 ABC44079
JLOC1	JLOC1_3970.15	1189	4e-23	1100 - 1156	100	57 / 57	plus
JLOC1	JLOC1_3970.14	2174	4e-23	2085 - 2141	100	57 / 57	plus
JLOC1	JLOC1_3970.13	1827	4e-23	1738 - 1794	100	57 / 57	plus
JLOC1	JLOC1_3970.12	1981	4e-23	1892 - 1948	100	57 / 57	plus
JLOC1	JLOC1_3970.11	2339	4e-23	2250 - 2306	100	57 / 57	plus
JLOC1	JLOC1_3970.10	1170	4e-23	1081 - 1137	100	57 / 57	plus
JLOC1	JLOC1_3970.9	1352	4e-23	1263 - 1319	100	57 / 57	plus
JLOC1	JLOC1_3970.8	1505	4e-23	1416 - 1472	100	57 / 57	plus
JLOC1	JLOC1_3970.7	1938	4e-23	1849 - 1905	100	57 / 57	plus
JLOC1	JLOC1_3970.6	1469	4e-23	1380 - 1436	100	57 / 57	plus
JLOC1	JLOC1_3970.5	1136	4e-23	1047 - 1103	100	57 / 57	plus
JLOC1	JLOC1_3970.4	1796	4e-23	1707 - 1763	100	57 / 57	plus
JLOC1	JLOC1_3970.3	1810	4e-23	1721 - 1777	100	57 / 57	plus
JLOC1	JLOC1_3970.2	1587	4e-23	1498 - 1554	100	57 / 57	plus
JLOC1	JLOC1_3970.1	1338	4e-23	1249 - 1305	100	57 / 57	plus
Harvest35	U35_18192	722	3e-25	4 - 63	100	60 / 60	minus
Harvest35	U35_18194	1635	1e-23	1554 - 1610	100	57 / 57	plus

Contig Sequence (722 bp)

>U35_18192 722 Hv_44K_v2
AGCAATTTGAGAAAATAGCACTGTCAACGATGTAGTAATGAAGTTCGGTAAAGCACAATG
TGATAGCATAACACATTACCACAAAGCACAGGTCTCCTCTGAATACAAGTTACCACAAAC
TACAGGTCAAATCTCCAAGTCATCATTCAGGAGAAAAAGAAAGGGTACGGGTCTCTGAAT
ACAACTCTGAGTCTGAGAACAGAGCACATAACAAGTAGACAGACAGGCATCAGGCCTCGC
AAACATAACGCTGCGCAGAACACGATGAAGCATACGCGACCGCCTATGAGGTCGCAAACT
GGATCCTGAAGTGGTCGCTCGCCGTTTACAGGTGCGCCCAAGATCAATCCGACCTCGCAG
GAGATGCAGAACGGGATACACTCCTGCTCCTGGGGCTTCTGCTCACGGATTTTCCAGACA
CCGAAGAAACAGGGGATCGAGATCTTGACAGTGATCTTTCATCCACAGGTAAGGGTGACC
GAGAGACAGATCTGCTATAGCTGCGACTTCTCGAGTAAGAGAGGCTACGGCTCCTGCTTC
TTGATCTAGCATCATACTCCCTCACCCTGATATATGCCCTTGAAAATGCATTTCTGAACT
CTGTACCATCGAGCTTCCTAATCGCATATTTCATGTCATCGTAGTTTGTATAATCCACAA
TTCCAACAGTTGCTCCAGCCTCGCGGTATACATCAGAAAAGCAGACATCGCCAGCCCGTC
GC

Homology of Contig U35_18192 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None