barSeed - Barley Seed Development Database

Probe CUST_35015_PI390587928

Source Contig U35_36726

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35015_PI390587928	Hv_44K_v2	TAATTCGTTGCTACTAACTGCTAGGTTTCATCCCGTTCACCAAAGGAGGGATCCTACTAC	161	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65057.4	4324	2e-24	3476 - 3535	100	60 / 60	plus	ABC05435 ABC09660
MLOC	MLOC_65057.17	2185	2e-24	1399 - 1458	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.15	2084	2e-24	1329 - 1388	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.16	2038	2e-24	1262 - 1321	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.10	3635	2e-24	2439 - 2498	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.8	2266	2e-24	1578 - 1637	100	60 / 60	plus	ABC05435
MLOC	MLOC_65057.7	2299	2e-24	1648 - 1707	100	60 / 60	plus	ABC05435
Harvest21	ABC31994	619	3e-25	162 - 221	100	60 / 60	plus
Harvest35	U35_36726	619	3e-25	162 - 221	100	60 / 60	plus

Contig Sequence (619 bp)

>U35_36726 619 Hv_44K_v2
TGCGCCTCATTCACACTGATTTAAAGCCCGAGAACATTCTTCTTGTTTCTCCGGAGTACA
TTAAAGTTCCTGATTACAAAGTATACTTTATTCTTTTACTAACTTGGCCTTGCAGTTATA
AATTATTCAACTTATTAGTTTATTGTGTATGCTGTCTGTGCTAATTCGTTGCTACTAACT
GCTAGGTTTCATCCCGTTCACCAAAGGAGGGATCCTACTACAAACGTGTGCCCAAGTCCA
GTTCAATAAAGGTTATTGATTTTGGCAGCACAACATATGACCAGCAGGACCAGACCTATG
TAGTTTCTACTAGGCATTATCGGGCCCCGGAAGTTATCCTGGGTATCTTTCTTGTCCAGT
GCAAAGGCTCTTCCCTTCAGCCAAATTTTGCGGTTGTAAGTTAATTTATATTTGCCATGG
TGGATGTTGTTTAGGACTTGGATGGAGTTACCCATGTGATATCTGGAGCGTTGGTTGTAT
ACTAGTTGAACTCTGCACGGGAGAGGCGCTGTTTCAAACCCATGAAAATTTGGAGCATCT
TGCTATGATGGAGAGGGTGCTCGGGCCGTTGCCATATCACATGCTCAAAAAGGCCGATCG
ACATGGTGAGAAATATGTG

Homology of Contig U35_36726 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g27520.1	424	4e-66	protein\|serine/threonine-protein kinase AFC2, putative, expressed
Brachypodium v1_2	Bradi3g47730.2	430	7e-68
Arabidopsis v10	AT3G53570.1	467	9e-56	\| Symbols: AFC1, AME2, FC1 \| FUS3-complementing gene 1 \| chr3:19861449-19864125 REVERSE LENGTH=467