barSeed - Barley Seed Development Database

Probe CUST_3500_PI390587928

Source Contig U35_18194

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3500_PI390587928	Hv_44K_v2	TTTGGAACTATGGATAGTAGAGCTGGATTATCAGCACGTATGGCGAGTGAGCAAGAAGTC	1051	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6123.1	675	2e-24	178 - 237	100	60 / 60	plus	ABC09536 ABC44079
MLOC	MLOC_6125.3	1762	2e-24	993 - 1052	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.1	2431	2e-24	999 - 1058	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.2	2270	2e-24	999 - 1058	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.7	1939	2e-24	969 - 1028	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.9	1472	2e-24	387 - 446	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.8	1169	2e-24	899 - 958	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.5	2348	2e-24	975 - 1034	100	60 / 60	minus	ABC09536 ABC44079
MLOC	MLOC_6125.6	2034	2e-24	974 - 1033	100	60 / 60	minus	ABC09536 ABC44079
JLOC1	JLOC1_3970.14	2174	8e-25	1098 - 1157	100	60 / 60	plus
JLOC1	JLOC1_3970.13	1827	8e-25	1263 - 1322	100	60 / 60	plus
JLOC1	JLOC1_3970.12	1981	8e-25	905 - 964	100	60 / 60	plus
JLOC1	JLOC1_3970.11	2339	8e-25	1263 - 1322	100	60 / 60	plus
JLOC1	JLOC1_3970.8	1505	8e-25	941 - 1000	100	60 / 60	plus
JLOC1	JLOC1_3970.7	1938	8e-25	862 - 921	100	60 / 60	plus
JLOC1	JLOC1_3970.6	1469	8e-25	905 - 964	100	60 / 60	plus
JLOC1	JLOC1_3970.4	1796	8e-25	720 - 779	100	60 / 60	plus
JLOC1	JLOC1_3970.3	1810	8e-25	734 - 793	100	60 / 60	plus
JLOC1	JLOC1_3970.1	1338	8e-25	774 - 833	100	60 / 60	plus
Harvest21	ABC51241	548	3e-25	147 - 206	100	60 / 60	plus
Harvest21	ABC09537	1172	3e-25	1052 - 1111	100	60 / 60	plus
Harvest35	U35_18194	1635	3e-25	1052 - 1111	100	60 / 60	plus

Contig Sequence (1635 bp)

>U35_18194 1635 Hv_44K_v2
ATGGTGGAAAAGCTCAATCTTACTCGTACGATCGCCCAAGCAGCTTTAGCAGTGGACGCC
GTGGAGGTGTTTCTAGGCGCTCTGAGTACCGAGTTATGGTTGATGGTTTACCTTCGTCAG
CGTCATGGCAAGATCTCAAGGACCATATGCGACGGGCTGGCGATGTCTGCTTTTCTGATG
TATACCGCGAGGCTGGAGCAACTGTTGGAATTGTGGATTATACAAACTACGATGACATGA
AATATGCGGTAGGCTGTCATATCATCTCTACACTCCGCTTTCTTTAATGATAAAATTCTT
GTGTAAACTATTCATCGATTGCTGTTGGAGAGGATCTGCTAAGAGGGCATCTTGGCGATG
TGTGGTTTGTTCCTGTTTTAGTTGGTATATACCCCTCTTATCATTGGTAATTTTCCAGAT
TAGGAAGCTCGATGGTACAGAGTTCAGAAATGCATTTTCAAGGGCATATATCAGGGTGAG
GGAGTATGATGCTAGATCAAGAAGCAGGAGCCGTAGCCTCTCTTACTCGAGAAGTCGCAG
CTATAGCAGGTATCTTAAATTTTCTTTCTGATTTACATCAAGTTTTATGACAAGTACTGA
TATTTGAGTGCATTGTTCCTTAGATCTGTCTCTCGGTCACCCTTACCTGTGGATGAAAGG
TTTGTCATTCTGTATATATAGCTGCAAGTTTTTTTGTTAGTAGTAACGGTGGTTTCGCTT
TTGGAAGAAATAGGAACAAATTGATCTTAGTATATGGCGTAATTCGGTTAGAAAAACAGA
AATAGGTCAATGGTTTGTTTTGATGTATCTCCGATTCTTCCTCAAGATATATAGCTCCTT
TTTTAAAATCTTGTAGAGAATCGATCTCTTTCTACTTTTCGCTTGACTCATTTTTTTGTT
ACCTATGGTCCAATGAATAATGAAACATGCTTGCTAGCTAGTTAACCTGTGACATTTAAG
GTTTTCTTTTGTTTTTCCTAGATCTGGCCATGCGGCGATCTGGGGACTGCTTCCATAGAA
AATTGGATGCGTTGAGATTTCAACAGGATGGTTTGGAACTATGGATAGTAGAGCTGGATT
ATCAGCACGTATGGCGAGTGAGCAAGAAGTCCTAGGAGCAAGATAGTCCTGATAGTAAGG
ATATGTGGAGTGGGTCTTGTGATCACTGTCAAGATCTCGATCCCCTGTTTCTTCGGTGTC
TGGAAAATCCGTGAGCAGAAGCCCCAGGAGCAGGAGTGTATCCCGTTCTGCATCTCCTGC
GAGGTCGGATTGATCTTGGGCGCACCTGTAAACGGCGAGCGACCACTTCAGGATCCAGTT
TGCGACCTCATAGGCGGTCGCGTATGCTTCATCGTGTTCTGCGCAGCGTTATGTTTGCGA
GGCCTGATGCCTGTCTGTCTACTTGTTATGTGCTCTGTTCTCAGACTCAGAGTTGTATTC
AGAGACCCGTACCCTTTCTTTTTTTCCTGAATGATGACTTGGAGATTTGACCTGTAGTTT
GTGGTAACTTGTATTCAGAGGAGACCTGTGCTTTGTGGTAATGTGTTATGCTATCACATT
GTGCTTTACCGAACTTCATTACTACATCGTTGACAGTGCTATTTTCTCAACTTGCTTCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_18194 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None