barSeed - Barley Seed Development Database

Probe CUST_34988_PI390587928

Source Contig U35_36731

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34988_PI390587928	Hv_44K_v2	ATGAAGGGTGATTACTACAGGTACCTTGCAGAGTTCAAGAGTGGAACTGAGAGGAAGGAT	543	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61457.1	1394	2e-24	505 - 564	100	60 / 60	minus	ABC01539 ABC01543 ABC53024
JLOC1	JLOC1_40162.1	1633	8e-25	687 - 746	100	60 / 60	plus
Harvest21	ABC53024	1136	3e-25	454 - 513	100	60 / 60	plus	ABC53024
Harvest21	ABC32007	639	3e-25	544 - 603	100	60 / 60	plus
Harvest21	ABC01538	1225	3e-25	564 - 623	100	60 / 60	plus
Harvest35	U35_36731	639	3e-25	544 - 603	100	60 / 60	plus
Harvest35	U35_14384	1340	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (639 bp)

>U35_36731 639 Hv_44K_v2
GCCTCCAACTCCTCCTGACCTCCCACCCACCAACCTCCCCTCCCCTCCCCTCCCCTCCCC
TCCCCAGCTGCGCCGCGCCATCGCCCGCCGACGCCGCAGCTCCTCCGCCGTCGACAGCCG
CCCGTCTTGCTCGAGAAACCAGAGACACTGAAGATGGCGCAGCCTGCTGAGCTTTCCCGT
GAGGAGAATGTGTACATGGCTAAGCTTGCAGAGCAGGCTGAGAGGTACGAGGAGATGGTT
GAGTTCATGGAGAAGGTGGCCAAGACGGTTGACTCCGAGGAGCTCACCGTCGAAGAGCGC
AACCTTCTATCAGTTGCTTACAAGAATGTTATTGGTGCCCGCCGTGCCTCGTGGCGCATC
ATTTCCTCCATCGAGCAGAAGGAAGAGAGCCGTGGCAACGAGGACCGTGTCACACTCATC
AAGGACTACCGTGGAAAGATTGAAGTTGAGCTCACTAAGATTTGTGATGGTATCCTCAAG
CTTCTTGATTCCCACCTTGTCCCCTCATCTACCGCTCCAGAGTCCAAGGTCTTCTACCTG
AAGATGAAGGGTGATTACTACAGGTACCTTGCAGAGTTCAAGAGTGGAACTGAGAGGAAG
GATGCTGCTGACAACACCATGGTGGCATACAAAGCTGCT

Homology of Contig U35_36731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g36974.5	206	7e-104	protein\|14-3-3 protein, putative, expressed
Brachypodium v1_2	Bradi5g12510.2	263	7e-104
Arabidopsis v10	AT3G02520.1	265	2e-89	\| Symbols: GRF7, GF14 NU \| general regulatory factor 7 \| chr3:526800-527915 REVERSE LENGTH=265