- Probe CUST_34959_PI390587928
- Source Contig U35_24766
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34959_PI390587928 | Hv_44K_v2 | ATGCTGTACCTTTTAGCTCTGCTGCTGAGAACAGAGATGCTTCTTTTGTAGCTCAAAAAA | 931 | GeneList: white MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.078 | 1.491 | 1.574 | 1.220 | 0.305 | 0.344 |
| Raw | 1917.060 | 4216.633 | 3842.437 | 4729.177 | 410.213 | 503.082 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK366202 | 1905 | 3e-22 | 1814 - 1869 | 100 | 56 / 56 | plus | ABC34524 ABC37229 |
| MLOC | MLOC_61514.7 | 922 | 3e-22 | 682 - 737 | 100 | 56 / 56 | plus | ABC04419 ABC34524 ABC37229 |
| MLOC | MLOC_61514.1 | 1966 | 3e-22 | 1636 - 1691 | 100 | 56 / 56 | plus | ABC04419 ABC34524 ABC37229 |
| MLOC | MLOC_61514.5 | 2112 | 3e-22 | 1566 - 1621 | 100 | 56 / 56 | plus | ABC04419 ABC34524 ABC37229 |
| MLOC | MLOC_61514.6 | 2115 | 3e-22 | 1569 - 1624 | 100 | 56 / 56 | plus | ABC04419 ABC34524 ABC37229 |
| JLOC1 | JLOC1_40205.4 | 3697 | 1e-22 | 1424 - 1479 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_40205.3 | 3799 | 1e-22 | 1636 - 1691 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_40205.2 | 3901 | 1e-22 | 1628 - 1683 | 100 | 56 / 56 | plus | |
| JLOC1 | JLOC1_40205.1 | 3906 | 1e-22 | 1633 - 1688 | 100 | 56 / 56 | plus | |
| Harvest21 | ABC34524 | 292 | 1e-23 | 12 - 72 | 98 | 60 / 61 | minus | ABC34524 |
| Harvest35 | U35_24766 | 1002 | 3e-25 | 932 - 991 | 100 | 60 / 60 | plus |
Contig Sequence (1002 bp)
>U35_24766 1002 Hv_44K_v2 TCAAATTTATTGCATTAACTTGAGACCAAGGGCGATCAGTCAAGTTCACTAATTCATAAG AATACACGACAACTATATAGATAATTTGAAATAGGAGAAAACTTCCCATGCATGTACATA GTGGTGACAATAAAGGAATTAGTTAATGTTGCAGGTTAACACAGAAATATGGTATATGGA TATGCCACCATTCGTACAGTAATATCAACATACTATATTTCCAGCCAGAACATACGTGAT TTTAACTTGTGATCATGCAAGTTTGTTTTTCGATGACTAAGACATATAGGAAGATATAAC CAGTTTGTATTAAATACGAAGCAATACATCAGATTACCTTGTACACTTAACTCGTGTAGG GTTGAATGGTTATCATCAAAAAGATCAATGTGATTTTATTTTGTCTAGATCATATAAATT GCCCAACATATCAGCGGCCGCTGGCCTTTCATGGCATTGAAGATGAGAAACCAACTTCAA GGACGTCTGGCCCACAAAAGATGGCTTCTGGGCTTATAAGTATCACCTTGAAATGTGTGG GGCCATCCATGGGTGAGAAGCAACCATTGACAAAGAAACTGCCTCCTGCAACTACGATTG GAAAGCTGAAATCTTTGTGTGAGAGTTTCTTTAAACTGAAGGACATCAAACTAAGATTAT TTCTCGAGGAAGAGCAGGGATGCCCACTACCACAACTACTCGAAGAAGAGACGGCTTCGC TCGTGGAGCTTGGGATAGGCACAGGAGCAACCATAATCGTCGATGAAGAAAGCTAGTCGT CTGCTAGGAACAGAAGAAAGAGCATATGTATTTGTGTGCACGGATACCACACTATGATTA CTTTAAAAAAACCAGTCTCCTTTTTTGTGTTCATTTGTTAGAGAAAATGTGATCTTCTTC GTGTGGTGTTACATTTGTGTAGACTTGTGAGATGCTGTACCTTTTAGCTCTGCTGCTGAG AACAGAGATGCTTCTTTTGTAGCTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_24766 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os05g01500.1 | 547 | 7e-59 | protein|tubulin-specific chaperone E, putative, expressed |
| Brachypodium v1_2 | Bradi2g39750.1 | 534 | 6e-60 | |
| Arabidopsis v10 | None |