barSeed - Barley Seed Development Database

Probe CUST_34938_PI390587928

Source Contig U35_36923

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34938_PI390587928	Hv_44K_v2	AATTCGATTTCCGATCCATTGATCTGTTATCGCTGATGAAAATCGTCGTATCCCCCCATC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356464	1524	2e-24	1331 - 1390	100	60 / 60	plus	ABC04561 ABC22323 ABC46818
MLOC	MLOC_29517.1	356	3e-21	111 - 170	97	58 / 60	plus	ABC22323
Harvest21	ABC22323	664	3e-25	580 - 639	100	60 / 60	plus	ABC22323
Harvest35	U35_36923	631	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (631 bp)

>U35_36923 631 Hv_44K_v2
GCCGGTAAGGGAGGCCACCCTTGCTGCACTCGTGGGCATTGTTGAGGGTGGAAGGGGATA
TAGCTTCAGGACATTGGAGGATGTGATATCCAAAAACAAGAAATTCACGAGGCAGTTGAG
TTACCATTGACACATCATGAATTGTACAAGCAGATTGGTATTGATCCTCCAAAAGGGGTG
CTGCTCTATGGTCCTCCAGGCACTGGCAAGACCATGCTTGCTAAAGCTGTGGCACATCAC
ATTACTGCTGCTTTTATCAGAGTGGTTGGTTCAGAGTTTGTGCAGAAGTACCTGGGTGAG
GTAAGTTGTGGATTATGTTTACAGTGCATCGTCATCTATCCTGCAGGTTTCAGTTTCCAG
AAGCGCCCGGCAGCCGCAGCGACCTCCACCATGGACGGCGCCTGAAACGTATGCCCGATC
ATGATATTTGGTCTAGGGCCTTCTGTGTTTCTTTGAATAGCCTGTATCGTTAGTTTCAGT
TCTTGCTTTCGATCTTTTGGTCGGTGCTGGAACTTGGATTTGTGGGTTGTTTTGGTGTGA
CAAATCAATTCGATTTCCGATCCATTGATCTGTTATCGCTGATGAAAATCGTCGTATCCC
CCCATCCTGACTGCAGGAGTTCCTTTGGCTC

Homology of Contig U35_36923 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None