barSeed - Barley Seed Development Database

Probe CUST_34924_PI390587928

Source Contig U35_12975

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34924_PI390587928	Hv_44K_v2	AACTTGATCAATCATCAACCCCTGTGCAGCACCCTGAGACTGATAAACAGCACCAGAAAA	461	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5773.1	1834	2e-24	386 - 445	100	60 / 60	plus	ABC06566 ABC06567
JLOC1	JLOC1_3735.1	1793	8e-25	300 - 359	100	60 / 60	plus
Harvest21	ABC23971	589	3e-25	462 - 521	100	60 / 60	plus
Harvest35	U35_12975	589	3e-25	462 - 521	100	60 / 60	plus

Contig Sequence (589 bp)

>U35_12975 589 Hv_44K_v2
GTTCCGTTCCGACCTGCGAAACTCCCAATTCCTCCTCCTCCTCCTCCTCCTCGTCCCCTC
CGCGCCGTGCGTGCATCGACGGAAGCGTCCAAACTCCACAGGCCACAGGGATCTCGATCG
ACACGCGGCGATCCGGCCCCGCCCCCCTTCCAGATCCCGATCCCCCCGGACCCCTCGCCG
CGGCCGATGCGACCCACGGCGCCGCCCCCGCGCCGCCGGATCGGACGACGAGCCGGCTGA
CGCCTGCCTCCTGCTCCCGCGACGCGCCCGGAATTTCGCCCCGAATTCGATGGGCTCCTT
CGGATTCGCCGCGCTCGCGGTGCTCCTCCTAGCCTTCGCCCTGCTCCCGGACCCTGCGGC
GGCGGCTAGGGTTTTGCAGGGCAAGAGGCCCGGCTCCGGCGAGGGAGCCCCTGCACCTAC
CCTCGCTACAGGTGGATCTGAAAAGAGTGCCACCTCCAAACAACTTGATCAATCATCAAC
CCCTGTGCAGCACCCTGAGACTGATAAACAGCACCAGAAAACACCACCGGTGGAAACACC
GCCACAGCCAGAAACCACGCAAACGCCACCACCGTCGGAAACGACACAA

Homology of Contig U35_12975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None