barSeed - Barley Seed Development Database

Probe CUST_34910_PI390587928

Source Contig U35_24956

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34910_PI390587928	Hv_44K_v2	ATCAGGGTGCTCTACTGCGGGATCTGCCACACTGACCTCTACACCATCAAGAACGAGTGG	291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65081.2	1587	2e-24	346 - 405	100	60 / 60	plus	ABC04260 ABC13997
MLOC	MLOC_65081.1	1713	2e-24	1179 - 1238	100	60 / 60	minus	ABC04260 ABC13997
JLOC1	JLOC1_42797.1	1919	8e-25	509 - 568	100	60 / 60	plus
Harvest21	ABC25588	506	3e-25	292 - 351	100	60 / 60	plus
Harvest35	U35_24956	508	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_24956 508 Hv_44K_v2
CAACATTTCCACCTGCGCAACTCGGTCCTTCCCCTGTCCTTCTTCCCCGGCGAGCTCGGC
GCCCGGTTCTCGCCCACTGAGCCCAGGCATCTGACGAGCAGCGTCCGCGTCGCTGTTGCG
TCGCCGTCAAGAGCCCTGCGGCCCCACATGGCGAAGGCGGTGGCGAAGGAGGTGGGGGCG
CAAGAGGCGGCGCAAGGCAGCGCGGCGCTCGGGTGGGCGGCCAGAGACGCCTCCGGTGTC
CTCTCCCCGTTCGACTTCTCAAGAAGGGCTCAGAAGGACGACGATGTGACGATCAGGGTG
CTCTACTGCGGGATCTGCCACACTGACCTCTACACCATCAAGAACGAGTGGGGCACCGCC
ATGTACCCCGTCGTCCCCGGGCACGAGATCCTGGGCGTCGTGACCAGCGTCGGCAGCGGC
GTCAGCAAGTTCAAGGCCGGCGACACGGTGGGCGTGGGCTACTTCGTCGGGTCGTGCCGC
TCCTGCGAGTGCTGCGGCAACGGGTACG

Homology of Contig U35_24956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g29780.1	422	9e-61
Arabidopsis v10	None