barSeed - Barley Seed Development Database

Probe CUST_34886_PI390587928

Source Contig U35_12986

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34886_PI390587928	Hv_44K_v2	CTTACACGGATGTTCCTGTCCCTAAGGTGTTTTGCCTTTGCACTGATGCTAGCGTGATCG	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19519.5	2034	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.3	2247	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.6	1792	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.1	2184	7e-23	202 - 261	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.4	2108	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.9	1785	7e-23	198 - 257	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.2	1894	7e-23	202 - 261	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.7	1835	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
MLOC	MLOC_19519.8	1699	7e-23	200 - 259	98	59 / 60	plus	ABC05191 ABC08274 ABC21120
JLOC1	JLOC1_13529.10	1969	4e-23	145 - 204	98	59 / 60	plus
JLOC1	JLOC1_13529.9	2042	4e-23	151 - 210	98	59 / 60	plus
JLOC1	JLOC1_13529.8	2147	4e-23	172 - 231	98	59 / 60	plus
JLOC1	JLOC1_13529.7	1866	4e-23	176 - 235	98	59 / 60	plus
JLOC1	JLOC1_13529.6	1802	4e-23	179 - 238	98	59 / 60	plus
JLOC1	JLOC1_13529.5	1766	4e-23	181 - 240	98	59 / 60	plus
JLOC1	JLOC1_13529.4	1781	4e-23	185 - 244	98	59 / 60	plus
JLOC1	JLOC1_13529.3	1857	4e-23	186 - 245	98	59 / 60	plus
JLOC1	JLOC1_13529.2	2192	4e-23	201 - 260	98	59 / 60	plus
JLOC1	JLOC1_13529.1	1902	4e-23	201 - 260	98	59 / 60	plus
Harvest35	U35_12986	496	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (496 bp)

>U35_12986 496 Hv_44K_v2
TCGATCACTGTTGGCCTACTGACAAAACAAAAAGAGAGAGGGGCAAGCGAACTGTTCCAC
AGTCGTCGTCCCCTGTCCCCTCCCCGTCCTCCGCCCCGCCCGCAATCCAATCCCGGACCG
GCGGCTGGCGGGCGAGCGAGCGAGATGGCGACGCTGACCTCGGAGCTGCTGCGGCCGGTG
CACGAGGCGCAGGCGCTGGACGAGGCGGCGCTGCTGCGGTACGCGGCCGCGCACGTCCCG
GGCTTCCCCGCGCCGGCGCCGGCGCTCGCCCTCACGCAGTTCGGCCACGGCCAGTCCAAC
CCCACCTACTGCCTCGAGGCCTCCGCTCCCGGCGGGGAGCCCCGGCGCTACGTGCTGCGG
AAGAAGCCCGCCGGCGCCATCCTCCAGTCCGCCCACGCCGTCGAGCGCGAGTTCCAGGTT
CTCAAGGCTCTGGGTGCTTACACGGATGTTCCTGTCCCTAAGGTGTTTTGCCTTTGCACT
GATGCTAGCGTGATCG

Homology of Contig U35_12986 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47820.2	620	7e-54	protein\|acyl-CoA dehydrogenase family member 10, putative, expressed
Brachypodium v1_2	Bradi1g17950.1	839	5e-54
Arabidopsis v10	None