- Probe CUST_34869_PI390587928
- Source Contig U35_36945
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34869_PI390587928 | Hv_44K_v2 | TCTACTTCGTCAAGAAGTCGTCCTTCTTCCCCTACCGATGGGTGCTCATCCAGTTCGGCG | 286 | GeneList: plum2 MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.027 | 0.071 | 1.250 | 1.987 | 1.235 | 1.093 |
| Raw | 6.049 | 28.470 | 439.320 | 1059.676 | 247.910 | 236.927 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250968.1 | 2592 | 2e-24 | 385 - 444 | 100 | 60 / 60 | plus | ABC04906 ABC04907 ABC07187 ABC15665 |
| MLOC | MLOC_59177.1 | 1339 | 2e-24 | 698 - 757 | 100 | 60 / 60 | minus | ABC04906 ABC04907 ABC07187 |
| JLOC1 | JLOC1_38491.2 | 1294 | 8e-25 | 397 - 456 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_38491.1 | 1095 | 8e-25 | 198 - 257 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32460 | 514 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_36945 | 514 | 3e-25 | 287 - 346 | 100 | 60 / 60 | plus |
Contig Sequence (514 bp)
>U35_36945 514 Hv_44K_v2 GCCGCCCCCTTTCCCACGCCACCGCCGCCCCCCGCCGCGCCGACCATCTCCGGCGCCCGC CTCACAAGCAACCAGAGCAGAGCAGGGAACAAATGCCGGCCAGGACGACGACGACGACGG CTCTCTAGCAAAAAAAAAGGCACCCCAGCCTCCAGATTAACTAGTGAAATGGAGGGCTGC GACTGCATCGAGCCGTTCTGGCCGACCGACGACCTCCTCATCAAGTACCAGTACATCTCC GACTTCTTCATAGCGCTCGCCTACTTCTCCATCCCGCTCGAGCTCATCTACTTCGTCAAG AAGTCGTCCTTCTTCCCCTACCGATGGGTGCTCATCCAGTTCGGCGCCTTCATCGTCCTC TGCGGGGCCACCCACCTCATAAACCTCTGGACCTTCACCATGCACACCAAGACCGTCGCC ATCGTCATGACCGTCGCCAAGGTCTCCACGGCCGTCGTGTCCTGCGCGACCGCCCTCATG CTCGTCCACATCATACCCGACCTGCTGAGCGTCA
Homology of Contig U35_36945 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os03g49500.1 | 637 | 1e-70 | protein|ethylene receptor, putative, expressed |
| Brachypodium v1_2 | Bradi4g00200.1 | 635 | 1e-73 | |
| Arabidopsis v10 | AT1G66340.1 | 738 | 3e-63 | | Symbols: ETR1, EIN1, ETR, AtETR1 | Signal transduction histidine kinase, hybrid-type, ethylene sensor | chr1:24734698-24737366 FORWARD LENGTH=738 |