barSeed - Barley Seed Development Database

Probe CUST_34803_PI390587928

Source Contig U35_41135

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34803_PI390587928	Hv_44K_v2	ATCTATCTGCAATAGTTGGCAGTGCTGTTGCTGCAAAATTGATGGGAATTGCTGGTGGTT	139	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70917.1	1976	2e-24	1055 - 1114	100	60 / 60	plus	ABC10591
MLOC	MLOC_70917.3	1974	2e-24	704 - 763	100	60 / 60	plus	ABC10591
MLOC	MLOC_70917.2	1709	2e-24	861 - 920	100	60 / 60	plus	ABC10591
JLOC1	JLOC1_47086.1	1947	8e-25	695 - 754	100	60 / 60	plus
Harvest35	U35_41135	346	3e-25	140 - 199	100	60 / 60	plus

Contig Sequence (346 bp)

>U35_41135 346 Hv_44K_v2
TCGACAACTAGTGGGAAGCCTCTTTCTCAGGAGAATTTGGTAAAAACCATTGAAGCATGT
GACAGAGCCCTTAATCTTGATGCTGCAAAGAAGAAGGTGCTTGATTTTGTAGAGGGTAGA
ATGGGTTACATCGCACCAAATCTATCTGCAATAGTTGGCAGTGCTGTTGCTGCAAAATTG
ATGGGAATTGCTGGTGGTTTGGGAGCACTTGCAAAAATGCCTGCTTGCAATGTTCAGCTA
CTTGGAGCAAAGAAGAAAAATCTTGCTGGATTTTCTAGTGCCACGTCTCAGTTTCGTGTT
GGCTATCTTGAACAAGCCGAAGTATTTCAGAGCACCCCTCCAGCCC

Homology of Contig U35_41135 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g04850.2	485	7e-51	protein\|pre-mRNA-processing factor 31, putative, expressed
Brachypodium v1_2	Bradi1g58180.2	485	1e-53
Arabidopsis v10	None