barSeed - Barley Seed Development Database

Probe CUST_34744_PI390587928

Source Contig U35_18808

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34744_PI390587928	Hv_44K_v2	CATCATCATTCCACGGTTCACAAACACCATTGTTTCTTTTCATATTCATATCATCTGAAC	1513	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.874	1.522	1.003	0.872	0.425	0.423
Raw	283.353	351.911	210.274	291.716	48.340	53.881

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54996.1	3169	2e-24	1371 - 1430	100	60 / 60	minus	ABC10091 ABC10092 ABC21364
JLOC1	JLOC1_35446.1	2900	8e-25	1651 - 1710	100	60 / 60	plus
Harvest21	ABC10092	742	3e-25	654 - 713	100	60 / 60	plus	ABC10092
Harvest35	U35_18808	1602	3e-25	1514 - 1573	100	60 / 60	plus

Contig Sequence (1602 bp)

>U35_18808 1602 Hv_44K_v2
CCCTTCCTCCACGGACGAATCCAACCCCCCTCGCCCACGCATCTCGCCCCCGCGCGCCCC
CCCTTTCCCTTCCCCCGCAAGCAACGACGGGCAGAGAGGGGGCGTCGGGGAATCGGCGGC
CGCCGGCGGCGATGAGGTCGACGGACTCCTCGTCGCGGTTCGTGCAGGAGCTGGTCCTGT
ACGCGGCGAGCGCGGCGCTCAGCTGCCTCGTCCTCTTCGCCGGCCTCCGCCAGCTCGACC
CCAACCGCGAGTCCTCCAAGAAGGCGCTCCAGCAGAAGAAGGAGATCGCCAAGCGCCTCG
GCAGGCCCCTCATCTCCACCACCCCCTACGAGGACGTGATTGCGTGCGACGTCATCAACC
CCGACGAGATCGACGTCGAGTTCGAGTCCGTCGGCGGCCTCGACGAGGTCAAGCAGGCGC
TCTACGAGCTCGTCATCCTGCCCCTGCGCCGCCCCGAGCTCTTCGCCTACGGCAAGCTCC
TCAGCCCGCAGAAGGGGGTGCTCCTCTACGGCCCGCCAGGGACCGGCAAGACCATGCTGG
CCAAGGCCATCGCCAAGGAGTCGGGCGCCGTCTTCATCAACGTCAGGATATCCAATCTCA
TGAGCAAGTGGTTCGGTGACGCCCAGAAGCTCGTGTCTGCCGTCTTTAGTCTGGCAAACA
AGCTCCAGCCTGCCATTATCTTCATCGATGAGGTCGATAGCTTCTTGGGACAGCGTCGGA
ACACAGACCATGAAGCTTTGACTAACATGAAGACGGAGTTCATGTCTCTATGGGACGGTT
TCACCACCGATCAGAATGCACGTGTGATGGTGCTTGCTGCTACAAACAGACCTTCCGAGC
TAGATGAGGCCATCCTCAGGCGCTTCACGCAGATATTTGAAATTGGGGTTCCTTCTCGCA
GTGAAAGAAGCAAGATACTTCAGGTTATACTGAAGGGAGAAAACGTCGAGTCTAACATTG
ATTACGATTACATTGCCAGCTTGTGTGAGGGCTTTACTGGGTCAGACATCCTAGAACTGT
GCAAGCAGGCTGCATTCTATCCTATCAGAGAGATTTTGAACAGCGAGAAAGATGGGACAA
GAGCAAACAGTCCAAGAGCCTTGAGGCAATCGGACCTGGAGAAAGCTCTTTCAACATCTA
GAAAGGGAAAGAAGGCCGCAAGCGGTGCGGCGTCAGGTTTCCAGTCTCCTGTGTGGACCC
GTCCGTCGGATCCTGAAGATGACCAGATCTCTGAAAAATCCGCAGTGGAGTAAGAGCTGG
CATTACCTACCTAGATTCAGCATATGTATTGGTTCGGTTAGCGTCATGGGGCTGCTCTCT
GGTTTTTGAAGTTAATTGCAGCTGGCAAAGCCTGCACTGATGTTTTGGGTTCCATGGTTC
TCTGTGTGGAAAATACAGAATTCTATACTTCTGTGGAACATTTGGTCTGTTCGTCACCTT
GTAATTTTCCTTTTGGAACATGACTATTGTAGGGTAGACAGACTCTAATACGTACTGAAG
AAATGTGCCCTTCCATCATCATTCCACGGTTCACAAACACCATTGTTTCTTTTCATATTC
ATATCATCTGAACATTATTTACATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_18808 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g50050.1	394	protein\|AAA-type ATPase family protein, putative, expressed
Brachypodium v1_2	Bradi1g35110.2	367
Arabidopsis v10	AT4G27680.1	398	P-loop containing nucleoside triphosphate hydrolases superfamily protein \| chr4:13821263-13823083 FORWARD LENGTH=398