barSeed - Barley Seed Development Database

Probe CUST_34739_PI390587928

Source Contig U35_18813

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34739_PI390587928	Hv_44K_v2	TGAAGTCTGGTTTCTATGACCTGCAATTGGCTAGAGATGAGTACAGACTCTCTTGTGGAG	1594	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.977	0.810	1.723	1.702	1.018	0.701
Raw	106.731	133.134	258.704	400.337	82.900	63.945

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363274	3768	2e-24	2553 - 2612	100	60 / 60	plus	ABC06948 ABC06949 ABC06950
MLOC	AK362746	3948	2e-24	2628 - 2687	100	60 / 60	plus	ABC06948 ABC06949 ABC06950
MLOC	MLOC_66670.1	2206	2e-24	1199 - 1258	100	60 / 60	minus	ABC06948 ABC06949 ABC06950
MLOC	MLOC_66670.2	2242	2e-24	1235 - 1294	100	60 / 60	minus	ABC06948 ABC06949 ABC06950
MLOC	AK356763	3864	3e-21	2710 - 2769	97	58 / 60	plus	ABC06948 ABC06949 ABC06950 ABC40620
MLOC	MLOC_68654.1	2194	3e-21	950 - 1009	97	58 / 60	plus	ABC06948 ABC06949 ABC06950 ABC40620
JLOC1	JLOC1_43964.2	2422	8e-25	950 - 1009	100	60 / 60	plus
JLOC1	JLOC1_43964.1	2457	8e-25	949 - 1008	100	60 / 60	plus
JLOC1	JLOC1_45436.1	2326	2e-21	950 - 1009	97	58 / 60	plus
Harvest21	ABC09546	1235	3e-25	1070 - 1129	100	60 / 60	plus
Harvest35	U35_18813	1760	3e-25	1595 - 1654	100	60 / 60	plus

Contig Sequence (1760 bp)

>U35_18813 1760 Hv_44K_v2
GGCACGAGGTAAAAGGCCGCTGCTACATTAAGACCTGAGACAATGTATGGGCAAACAAAC
TGTTGGGTATTGCCTGATGGGCATTATGGGGCTTTNGAGATCAATGAAACTGATGTCTTC
ATTGTGACAGCACGGTCAGCGCTTAACCTTGCGTATCAGCATCTATCCAGGGTCCCAGAA
AAGCCTACCTGCTTAGCTGAGCTTACTGGCAATGATTTGATTGGGTTGCCATTGAAGTCT
CCTCTTTCATTCAATGATATCATATATGCACTTCCCATGCTCACTATCTTGACAGATAAA
GGTACTGGCATTGTGACTAGTGTGCCAAGTGATTCGCCAGATGATTACATGGCACTGCAA
GATTTAATCACAAAGCCCGCTTTGAGACAGAAGTATGAAGTCCAAGATGAATGGGTTCTT
CCATTTAATATCATACCGATAATCAACATACCTGAGTTTGGGGACAAGGCAGCTGAGAAG
GTGTGCCTTGATCTTAAGATTAAGAGCCAGAATGACAAGGAGAAGCTTGCTGAAGCAAAA
AGGATGACATACCTTAAAGGATTTACAGATGGAGTGATGATTGCAGGGGAGTTTGATGGT
AGAAAGGTTCAAGAAGCGAAGCCACTGATAAAGAACAAGCTTCTTGGAGAAGGCTCTGCT
GTGTTGTATAGTGAGCCTGAGAAGAAAGTAATGTCAAGATCCGGCGATGAATGCGTGGTT
GCTCTTACAGATCAGTGGTACATAACTTATGGAGAAACTGAATGGAAACAGAAGGCAGTC
AAATGTTTGGGAAATATGAATACATTCTCAGCTGAAACCCGTAACGGATTCGAACACACC
TTGGGCTGGCTGAAGCAGTGGGCATGTTCACGCTCTTTTGGCCTAGGTACCCGCATTCCA
TGGGATGAGCAGTTCCTGGTAGAATCTCTCTCAGATTCAACCCTGTACATGGCTTATTAC
ACCATCGCTCATCATCTACAAAATGGTAATATGTATGGACAAGAAATATCTTCTATCAAG
CCAGAAGAAATGACAGATGAAGTATGGGAATATGTGTTCTGTGATGGTCCGGCACCCAGT
AGCAACATCTCTCCTGCCCTCTTGAGCAAAATGAAGCAAGAGTTCAAGTATTGGTACCCA
TTTGATATTCGGGTATCTGGCAAGGACCTTATCCAGAATCATCTGACATTCAGCATCTAC
AATCATACAGCACTTCTTCCAGAGCATCATTGGCCTCGTGGTTTTCGTTGCAATGGGCAT
CTTATGCTCAACTCTGAGAAGATGTCCAAGTCCACAGGTAACTTCCGAACTCTTCGGGAG
GCTATTGAAGATTTCTCTTCAGATGCCACTAGGTTTGCCCTTGCTGATGCTGGTGATGGT
ATGGACGATGCAAACTTTGTTTTTGAAACTGCAAATGCTGCTATTTTGAGGCTCACAAAG
GAAATCGCTTGGATGGAAGAAGTTATAGCTGCTGAATCTTCTCTGAGAGGCGGCCCTCCT
TCTACGTATGCTGACCATGTGTTTGCTAATGAGATCAACATTGCTGTAAAAGAAACTGAG
AAGAGCTACAACGCCTTCATGTTCAGAGATGCCCTGAAGTCTGGTTTCTATGACCTGCAA
TTGGCTAGAGATGAGTACAGACTCTCTTGTGGAGCGGTGGGCATGAACCGTGAGTTGTTG
GAGCGGTTTATGGAAGTCCAGACCAGGCTTATCACCCCGATCTGCCCCCACTACGCTGAG
CATGTGTGGCAAAAGATGCT

Homology of Contig U35_18813 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os09g32650.1	1096	protein\|leucyl-tRNA synthetase, cytoplasmic, putative, expressed
Brachypodium v1_2	Bradi2g08390.1	1097
Arabidopsis v10	AT1G09620.1	1091	ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases \| chr1:3113077-3116455 REVERSE LENGTH=1091