barSeed - Barley Seed Development Database

Probe CUST_34715_PI390587928

Source Contig U35_18837

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34715_PI390587928	Hv_44K_v2	GATATTGTCAAATCAGCCTGGAATTCCTCTTTACAGAGCTGTGTAAAAATCTCTTTATTG	371	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_68937.2	3215	2e-24	3140 - 3199	100	60 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.3	4028	2e-24	3953 - 4012	100	60 / 60	plus	ABC10213 ABC40201
MLOC	MLOC_68937.1	3201	2e-24	3110 - 3169	100	60 / 60	plus	ABC10213 ABC40201
JLOC1	JLOC1_45655.1	3262	8e-25	3147 - 3206	100	60 / 60	plus
Harvest21	ABC10213	434	3e-25	354 - 413	100	60 / 60	plus	ABC10213
Harvest35	U35_18837	580	3e-25	497 - 556	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_18837 580 Hv_44K_v2
AAGGCCTGTGGATACTGAAGCTAGAATAGTAAAGATCAAGGCAAATGGTTTCATAGTTTT
CGTACCGAAGTTTGGCATAGAAGGCCCCATCTATCTTACGGCGAAGGGAGACAAAGGGGC
TGACTGGGTAGTAGACGAGGTGCACCAGAAAGTAACCAAGCCTGGAACAAACATAAGCTA
TGCTGTGTTGCAGAGTGTTATGATCCATATGGAAGTGGTCGAGCCTCAGCCTCACCGCCC
AAAGCTACAGCTCACCCTCATATGAACAACAAATGTACAAATGAATTGTAACATTAGTGC
ATTCACCCTTTTTCCGCTACGGCATTGTACCAGGGTCCATTCTTCAATTCAACAAATTTT
GGTGATTTTATGATATTGTCAAATCAGCCTGGAATTCCTCTTTACAGAGCTGTGTAAAAA
TCTCTTTATTGATGCTAAAAATCTATCATGCTCTGCTGCTTTGTGTTAAAAAAAAAAAAA
ATTTTGGTGATTTTATGATATTGTCAAATCAGCCTGGAATTCCTCTTTACAGAGCTGTGT
AAAAATCTCTTTATTGATGCTNNAAAAAAAAAAAAAAAAA

Homology of Contig U35_18837 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None