barSeed - Barley Seed Development Database

Probe CUST_34694_PI390587928

Source Contig U35_13846

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34694_PI390587928	Hv_44K_v2	TGTCTGTCTGTAAATTGTGCTTCCAATCCAAAACGCAGTGTTAAATTTTTGATTTCCTCC	1494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_33664.2	2257	6e-24	2174 - 2232	100	59 / 59	plus	ABC01040
JLOC1	JLOC1_21780.1	740	3e-24	580 - 638	100	59 / 59	plus
Harvest21	ABC01040	801	3e-25	725 - 784	100	60 / 60	plus	ABC01040
Harvest35	U35_13846	1571	3e-25	1495 - 1554	100	60 / 60	plus

Contig Sequence (1571 bp)

>U35_13846 1571 Hv_44K_v2
ACCACCGCTCCCCGTAACCAAGAAATCCCCACCCAATCTCGTCTCCGATTGACTCGAGAG
CTCGTCAAATCCTCCTCCCCGCGGCCTCAAGATGCAGATCTTTGTGAAGACCCTCACTGG
CAAGACCATCACCCTTGAGGTTGAGAGCTCTGACACCATCGACAATGTCAAGGCTAAGAT
CCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCT
GGAGGATGGCCGCACCCTCGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGT
GCTCCGCCTTCGTGGTGGTATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCAC
CCTTGAGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGA
GGGCATCCCCCCGGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCG
CACCCTTGCGGACTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTTCG
TGGTGGTATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGA
GAGCTCTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCC
GGACCAGCAGCGCCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTCGCGGA
CTACAACATCCAGAAGGAGTCCACCCTCCACCTTGTGCTCCGCCTCCGCCCAAGATGCAG
ATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACC
ATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCGCCGGACCAGCAGCGG
CTGATCTTCGCCGGGAAGCAGCTGGAGGACGGGCGCACGCTGGCCGACTACAACATCCAG
AAGGAGTCGACGCTGCACCTCGTGCTCCGCCTCCGCGGCGGCATCATCGAGCCCTCGCTC
CAGGCCCTCGCCCGCAAGTACAACCAGGAGAAGATGATCTGCCGCAAGTGCTACGCTAGG
CTGCATCCAAGGGCTGTCAACTGCCGCAAGAAGAAGTGTGGCCACAGCAACCAGCTGAGG
CCCAAGAAGAAGATCAAGAACTAGGCTGATTGTTGCTTTCGTTGTCTGGATAAATCAGTA
GACATAAAAATATTTTCCGGTTATCGTTTTGCTGCTCCTCAGGATGTTGAACCTTGGTTA
CTCTAGATGAGTACTTGGCCTTGTTTTAATGTCATGACATAGTGTGTCTGTTGCTGGTAA
AAAAAAAAAAAAAAATGGTTACTTGTATGATTGTGCACCCTACACGTTCGGATTTTGGTC
TTTTGTTGCTCTGCCACCACAATGTTAGCAAATTTGTGGGCCTGTTTTCAGAAATTCAGA
ACAGCTTCGCTGAATTTAAACCAGGATTCTGAAAAAAAAAAAAAAAAATTGGTGTGTCTG
TCTGTAAATTGTGCTTCCAATCCAAAACGCAGTGTTAAATTTTTGATTTCCTCCAAAAAA
AAAAAAAAAAA

Homology of Contig U35_13846 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53620.1	393	2e-159	protein\|ubiquitin family protein, putative, expressed
Brachypodium v1_2	Bradi1g32700.1	382	1e-159
Arabidopsis v10	AT4G05320.2	457	8e-160	\| Symbols: UBQ10 \| polyubiquitin 10 \| chr4:2718559-2719932 FORWARD LENGTH=457