barSeed - Barley Seed Development Database

Probe CUST_34693_PI390587928

Source Contig U35_13847

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34693_PI390587928	Hv_44K_v2	ACCTAGCTCCATCAATCTGCCGCAGAGAGTGTGATCGAAAGATGGCGTCCAGAGCAGCAG	66	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.588	1.345	1.198
Raw	2.915	2.915	2.665	3.548	3.085	3.059

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54892.1	1324	2e-24	44 - 103	100	60 / 60	plus	ABC01852 ABC01859 ABC01873
JLOC1	JLOC1_35359.1	1595	8e-25	117 - 176	100	60 / 60	plus
Harvest35	U35_13847	614	3e-25	67 - 126	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_13847 614 Hv_44K_v2
TCGAGCACTGTTGGCCTATTGGAGGAAGCCACACGACGACCGCCGGCCGCCCTAGGTACC
TGCAAAACCTAGCTCCATCAATCTGCCGCAGAGAGTGTGATCGAAAGATGGCGTCCAGAG
CAGCAGCGGCCCTGGTCGTCGTGGCCATGGCCTGCGCCGTCGTCCATTCGGCAGCGGCGG
CCGCCGGGGAGCTTTCGCCGGACTTCCACGCGGGCTCGTGCCCGGACCTGGAACACATCG
TCCAGTATCACGTCGCCGAGGCCTTCCGTAAAGACGTCGGCGTAGCGCCGGGGCTCATCC
GCATCTTCTTCCACGACTGCTTCCCTCAGGGCTGCGACGCGTCGGTGCTCCTGACCGGCA
ACAACAGCGAGCAGGCGTTGGGGCCAAATCTGACGCTCCGGCCGGTGGGGCTCAACCTCA
TCGAGACCATCCGCGCCGCCGTCCACAGGTCCTGCGGCCGGACTGTCTCCTGCGCCGACA
TCACCGTTCTCGCTACCCGTGACTCCGTCGTGCTGGCTGGCGGGCCCCGCTTTGAGGTGG
CTCTGGGCCGGCGCGACGGGCTGGCCCCAGCGTCGCAGGACCTCGTCTTCACCCTTCCAG
CCCCCTCATTCACC

Homology of Contig U35_13847 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59150.2	292	2e-59	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27130.1	343	5e-64
Arabidopsis v10	None