barSeed - Barley Seed Development Database

Probe CUST_34672_PI390587928

Source Contig U35_13853

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34672_PI390587928	Hv_44K_v2	GTTCCCTCTCTTTCGTAAGCAATGCATGTAGTATAAAATAACAAGGAATGAAGATCGAAT	1209	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368098	1476	2e-24	1412 - 1471	100	60 / 60	plus	ABC01219 ABC01226 ABC01228 ABC01237 ABC01242
JLOC1	JLOC1_50301.1	833	8e-25	657 - 716	100	60 / 60	plus
Harvest21	ABC30679	473	3e-25	366 - 425	100	60 / 60	plus
Harvest21	ABC01228	1270	3e-25	1179 - 1238	100	60 / 60	plus	ABC01228
Harvest35	U35_13853	1339	3e-25	1210 - 1269	100	60 / 60	plus

Contig Sequence (1339 bp)

>U35_13853 1339 Hv_44K_v2
TCATCTCTCTCTCGCTCACCTATACATCATCATCTCCTCTGCCTAACAAGCTAAGCAGCT
CAGCTCAAGCATCGGCAATGGAGGGCAAGGAGGAGGACGTGCGTCTGGGCGCGAACCGGT
ACTCGGAGCGGCAGCCGATTGGGACGGCGGCGCAGGGCGGCGGCGCGGACGAGAAGGACT
ACAAGGAGCCGCCGCCGGCACCGCTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCCTTCT
ACCGCGCGGGGATCGCCGAGTTCCTGGCCACCTTCCTGTTCCTGTACATCAGCGTGCTCA
CGGTGATGGGCGTGGTGGGCAACCCCTCCGGCTCCAAGTGCGGCACCGTGGGCATCCAGG
GCATCGCCTGGAGCTTCGGGGGCATGATCTTCGTGCTCGTCTACTGCACCGCCGGCATCT
CCGGCGGCCACATCAACCCCGCCGTCACCTTCGGGCTGTTCCTGGCCAGGAAGCTGTCGC
TCACCCGGGCCGTGTTCTACATGGTGATGCAGTGCCTGGGAGCCATCTGCGGCGCCGGGG
TGGTGAAGGGGTTCCAGACCACGCTGTACATGGGCAACGGCGGCGGCGCCAACTCGGTGG
CGCCGGGGTACACCAAAGGCGACGGCCTGGGGGCGGAGATCGTGGGGACCTTTGTGCTCG
TGTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAGCGCCAGAGACTCCCACGTCCCCA
TTTTGGCGCCGCTGCCGATCGGGTTCGCGGTGTTCCTGGTGCACCTGGCGACAATCCCCA
TCACCGGCACCGGCATCAACCCGGCGCGCTCCCTCGGCGCCGCCATCATCTACAACAAGA
AGCAGTCGTGGGACGACCACTGGATCTTCTGGGTGGGCCCGTTCACCGGCGCGGCGCTGG
CGGCCATCTACCACGTGGTGGTGATCAGGGCCATCCCCTTCAAGAGCCGCGACTAGTATA
CTCAATCAGCCATGGAATGGATGGAATCCTATCGCGTATTGTTCATCAACCATCATTTGT
GCTGATCGTTGCTCGTGCATTGCTACGTGGCTGAATCATCGCCGGCACCTCCTGTAATTA
TCGGTCTACCGTACTGTTCTTGAGCGAGCGAGCGAGCGTGTGTGTGTATCTTTCAGTGTT
GTCTACGTTACTAGTGTGGTGCACTTCTTCACTGCACCTACCCAAAATGTGCAAACGTCA
GTACTTGTGGTTCCCTCTCTTTCGTAAGCAATGCATGTAGTATAAAATAACAAGGAATGA
AGATCGAATTAACGATCTATCTGTTAAAAAAAAAAAAAAAACATCAATAAAAAATCAGTT
CCAAAAAAAAAAAAAAAAA

Homology of Contig U35_13853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g57720.1	289	2e-177	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g56020.1	290	0.0
Arabidopsis v10	AT4G00430.1	287	2e-165	\| Symbols: TMP-C, PIP1;4, PIP1E \| plasma membrane intrinsic protein 1;4 \| chr4:186143-187531 REVERSE LENGTH=287