barSeed - Barley Seed Development Database

Probe CUST_34669_PI390587928

Source Contig U35_13856

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34669_PI390587928	Hv_44K_v2	GGTGTATGATAAATGCAAGTTAAACCTTGTACTCTCTCCATTCTTCAACTTAGAATCCAT	1259	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.918	0.998	0.762	0.554	1.268	1.129
Raw	3.012	6.444	4.705	3.349	2.945	2.991

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72076.2	1404	3e-21	1345 - 1404	97	58 / 60	plus	ABC01852 ABC01859 ABC01873
JLOC1	JLOC1_47944.1	1425	2e-21	1293 - 1352	97	58 / 60	plus
Harvest21	ABC01859	1298	6e-22	1213 - 1272	97	58 / 60	plus	ABC01859
Harvest35	U35_13856	1359	3e-25	1260 - 1319	100	60 / 60	plus

Contig Sequence (1359 bp)

>U35_13856 1359 Hv_44K_v2
TCGAGCACTGTTGGCCTACGTTGAGCAAGCCACACGACCATCATCGTGCAAAAAAGCTCA
GCTACATCTCTGTAGGGCGACAGCAATGGCGTCCAGAGCAACAGCGACCGTCCTCGTCCT
GGCAGCCTTGATCTGCGCCGCCCAGTCGACCATCTCGGCCGCGGACGCCGGCGGGCTGTC
CCGGGGCTTCCACGCCGCGTCGTGCCCGGGCCTGGAGAAGATCGTGGGGGACCTCGTGGC
GGAGACCTTCCGGCGCGACGTCGGCGTCGCCCCCGCCCTCATCCGCATCCTCTTCCACGA
CTGCTTCCCGCAGGGCTGCGACGCGTCGGTGCTCCTCACCGGGAACAACAGCGAGCTGAA
TGCGGTGCCCAACCAGACGCTCCGCCCCGTTGCTCTCGACCTCATCGAGCGCATCCGCGC
CGCCGTCCATGCCGCCTGCGGCCCGACCGTCTCCTGCGCCGACATCACCGTCCTCGCCAC
CCGTGACGCCCTCGTACAGGCTGGCGGGCCACACTTCGACGTCGCCCTCGGCCGCCGCGA
CGGGCTCGCCCCGGCGTCCCAGGACCTCGTGGACACCCTGCCGGCGCCCTCCTTCGACGT
GCCGACTCTCATCTCCTCCTTCGGCAACCGGAGCCTCGACGTGGCCGACCTCGTCTCGCT
CTCCGGCGCGCACACCTTCGGCGTCGCCCACTGCCCCGTCTTCTCCGACCGCTTCGCTCC
CAACATCGACCTCAACCCGCTCATCGACCCGCTATTCGCCAGGAGGCTGCGGGCCAAGTG
CGCCAAGGACGTGCCCCAGGGCACCGTCAATCAGACCCTCGACGTGCGCACGCCCGACGT
GTTCGACAACAAGTACTACTTCGACCTCATCGTCAGGCAGGGATTGTTCAAGTCCGACCA
GGCCCTCATCGACCACCCCGACACGAGGCTCTTGACCACGCGGTTCGCGCTCAGCCAGTC
TGCCTTCTTCAGGCAGTTCGCCATGTCCATGGTGAAGATGAGCAACATGGACTTGCTCAC
CGGCACCCAGGGCGAGATCCGGCAGAACTGCGCCGTCCCCAACAGGCGTGTCGAGGGTAT
CGAGACCGCCAACGACGAGGGACACGCCGCCGCCATGTGAGAGATTGGTTAATCGTCCAT
GCTAGCTCACGCGTGCACTGGAGATGGTGTCCTTCTGCTAGTCGTTTTGTCCAGTCGTCG
TTCGTGTTGTAATAAAATGATGAGTGGGTGCTCAGAGTATATCAGACAATCGTGGTTACG
GTGTATGATAAATGCAAGTTAAACCTTGTACTCTCTCCATTCTTCAACTTAGAATCCATT
AATTATGTGTTGTTAAGTTAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_13856 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59150.1	347	2e-137	protein\|peroxidase precursor, putative, expressed
Brachypodium v1_2	Bradi5g27130.1	343	2e-157
Arabidopsis v10	AT1G71695.1	358	3e-92	Peroxidase superfamily protein \| chr1:26964359-26966557 FORWARD LENGTH=358