barSeed - Barley Seed Development Database

Probe CUST_34665_PI390587928

Source Contig U35_25830

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34665_PI390587928	Hv_44K_v2	CACAAAATCACGAGCAATTCCATGACCGCTTGTATCCTTGGTGAATTGCCCCAACATTTC	156	GeneList: white MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.093	1.224	1.456	1.109	0.354	0.347
Raw	92.745	165.947	170.283	210.230	23.325	24.389

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26278.1	1492	2e-24	1220 - 1279	100	60 / 60	plus	ABC14383
JLOC1	JLOC1_17849.1	1155	8e-25	883 - 942	100	60 / 60	plus
Harvest35	U35_25830	718	3e-25	157 - 216	100	60 / 60	plus

Contig Sequence (718 bp)

>U35_25830 718 Hv_44K_v2
AAAAAAAGAAGCTAATGCAGCACATACATAATGTACGCATTAGTGATAAAATATGTGGAA
AAGGAATAAAATCTAGTAGTAGCAGTTTCTTCCCGTCAAGACCAAATCATTACGTAAAAC
TTCTAAATTTATGAGGCTATAAAAGAGCTATAAAAACACAAAATCACGAGCAATTCCATG
ACCGCTTGTATCCTTGGTGAATTGCCCCAACATTTCGAGAGGACGAGGCAAGATGTCGGT
CGAGGACGTCGGCGTGTAGTCGCCCGAGGCGTCGCCGGGGCACTACGTGGGGCGGGTCGA
CGAGGTGCCGCCCGATGATGACGGCTGCGACGACGCCCTTGAGGCCGACGGGCGGGGCAC
CGGGGATGATGACCCCTTCGACATCCCCGCCGAGCGCAAGCCGGTCGAGAGGCTATGGCG
GTGGAGGGTTGCTATGACGCGGACAAGCTGCTGCTGCAGGTGGACGAATCCTCATGGATG
CTCAACCTATCTCTCCTACGACCACACGTGATGCTAGCCTTTCAGGTTTCTTCACAAGTA
TCGGAGAAGAAGAAGCATAGTTCAGTGGATCTAGTTCTGGGAGTAATGAAGCCCATGCGA
TGCTTCATTACTATACACTTGTAGAGCTTTTTATCTCATTGTAAACTTAATGCTAATCAC
ATTTATATGTGTTATATTATGAAAAGATGCTTTTTGCTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_25830 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None