barSeed - Barley Seed Development Database

Probe CUST_3465_PI390587928

Source Contig U35_3401

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3465_PI390587928	Hv_44K_v2	GATGTAACAAAAGCAAAGGGCGCACAACAATCTTCTTTACCAATTTTTTCTGACATGTTA	1112	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4005.2	1110	2e-24	997 - 1056	100	60 / 60	plus	ABC08957
JLOC1	JLOC1_2429.1	1163	8e-25	998 - 1057	100	60 / 60	plus
Harvest21	ABC08957	1188	3e-25	1113 - 1172	100	60 / 60	plus	ABC08957
Harvest35	U35_3401	1188	3e-25	1113 - 1172	100	60 / 60	plus

Contig Sequence (1188 bp)

>U35_3401 1188 Hv_44K_v2
CTGAGGCGAGTCCGTCATCCGACTCGAGACATCTGATCTCACCGGGGCCCACGCCGAAAC
CCTCTCTGCCCTCTCTCCTTCCTCCAGATAGAGCCGCCGCCGCCCCTCCGCGTCGATCTC
CGTCGCCGCTTCCCAATCCCGCTCGCCGCGCCGCCCCTACGCGTCGATCTCCGTCGCCGC
TTCCCAATCCCGGTATCCGCGCCGCCCCTCCGCGTCGATCTCCGTCGCCGCTTCCCAATC
GCCGCTCACCATGTTCAAGAAGTTCTCCTCCGAAGACATATCCGGGCAGAATCAGGTCAA
GGCGTCCGTGCAGCGGAGGATCCGGCAAAGTATCGCGGAAGAGTACCCTCTCCTTGAACC
TTTGCTGGAGGACATGCTTCCAAAGAAGTCGCCTATGATTGTTGTCAAATGCCAAAATCA
TCTCAATCTTGTGGTGGTGAACAATGTCCCACTCTTCTTCAACATCCGTGATGGTCCATA
CATGCCAACCCTGCGCCTTCTTCATCAGTATCCTAACATCATGAAGAAATTCCAAGTGGA
CAGAGGTGCTATCAAGTTTGTTCTCTCTGGTGCCAACATAATGTGCCCTGGACTGACATC
GCCTGGTGGTGTGCTGGACAATGAAGTCGAGGAGGAAACACCAGTGGCTATAATGGCTGA
AGGCAAGCAACACGCGTTGGCAATTGGATTCACAAAGATGTCAGCGAAAGACATAAGCAC
CATCAACAAAGGAATTGGAGTTGACAACATGCACTATTTGAATGATGGCCTGTGGAAGAT
GGAGCGGCTCGAGTAAGTAGTATCGCTAAGGGAAGCAGAATTCGCGGCAAGGCCATATGG
AACTGTAACTAGTCGCATCATGTGTTGTTTTCATATGGGAGAAACCTGAATCTAGGCGGA
TGCTTTAGTTGGTACTATGCTGCCGCCGAGATCCTTGTATGATACGTGACTGTATCGCTC
ATCATTCACACTTTTACCAATAACAGTTCAGAAGAAAGCCGTGTTTTTTATGAGGCCAGC
GAAAACAGAAATATACACTGTATTTGTGTTTTGTATAAGGCATTGCCGCAACCTGATTTG
ATTTGATTTGATTTCTGGAGGTAATCCACATTGATGTAACAAAAGCAAAGGGCGCACAAC
AATCTTCTTTACCAATTTTTTCTGACATGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3401 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g21180.1	182	7e-96	protein\|translation machinery-associated protein 20, putative, expressed
Brachypodium v1_2	Bradi2g11910.1	182	1e-100
Arabidopsis v10	AT1G09150.1	181	1e-90	pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein \| chr1:2946599-2948908 FORWARD LENGTH=181