barSeed - Barley Seed Development Database

Probe ABC08957

Source Contig ABC08957

barSeed

Links

Affymetrix Source Sequence (1188 bp)

>ABC08957 1188
CTGAGGCGAGTCCGTCATCCGACTCGAGACATCTGATCTCACCGGGGCCCACGCCGAAAC
CCTCTCTGCCCTCTCTCCTTCCTCCAGATAGAGCCGCCGCCGCCCCTCCGCGTCGATCTC
CGTCGCCGCTTCCCAATCCCGCTCGCCGCGCCGCCCCTACGCGTCGATCTCCGTCGCCGC
TTCCCAATCCCGGTATCCGCGCCGCCCCTCCGCGTCGATCTCCGTCGCCGCTTCCCAATC
GCCGCTCACCATGTTCAAGAAGTTCTCCTCCGAAGACATATCCGGGCAGAATCAGGTCAA
GGCGTCCGTGCAGCGGAGGATCCGGCAAAGTATCGCGGAAGAGTACCCTCTCCTTGAACC
TTTGCTGGAGGACATGCTTCCAAAGAAGTCGCCTATGATTGTTGTCAAATGCCAAAATCA
TCTCAATCTTGTGGTGGTGAACAATGTCCCACTCTTCTTCAACATCCGTGATGGTCCATA
CATGCCAACCCTGCGCCTTCTTCATCAGTATCCTAACATCATGAAGAAATTCCAAGTGGA
CAGAGGTGCTATCAAGTTTGTTCTCTCTGGTGCCAACATAATGTGCCCTGGACTGACATC
GCCTGGTGGTGTGCTGGACAATGAAGTCGAGGAGGAAACACCAGTGGCTATAATGGCTGA
AGGCAAGCAACACGCGTTGGCAATTGGATTCACAAAGATGTCAGCGAAAGACATAAGCAC
CATCAACAAAGGAATTGGAGTTGACAACATGCACTATTTGAATGATGGCCTGTGGAAGAT
GGAGCGGCTCGAGTAAGTAGTATCGCTAAGGGAAGCAGAATTCGCGGCAAGGCCATATGG
AACTGTAACTAGTCGCATCATGTGTTGTTTTCATATGGGAGAAACCTGAATCTAGGCGGA
TGCTTTAGTTGGTACTATGCTGCCGCCGAGATCCTTGTATGATACGTGACTGTATCGCTC
ATCATTCACACTTTTACCAATAACAGTTCAGAAGAAAGCCGTGTTTTTTATGAGGCCAGC
GAAAACAGAAATATACACTGTATTTGTGTTTTGTATAAGGCATTGCCGCAACCTGATTTG
ATTTGATTTGATTTCTGGAGGTAATCCACATTGATGTAACAAAAGCAAAGGGCGCACAAC
AATCTTCTTTACCAATTTTTTCTGACATGTTAAAAAAAAAAAAAAAAA

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK358038	1139	0.0	57 - 1139	99	1082 / 1083	None	ABC08957
MLOC_4005.2	1110	0.0	1 - 1056	100	1056 / 1056	CUST_3465_PI390587928	ABC08957
AK372841	3912	3e-105	2 - 209	100	208 / 208	CUST_13210_PI390587928	ABC02777 ABC08483 ABC08957
MLOC_4005.3	1323	8e-71	1 - 146	100	146 / 146	None	ABC08957
MLOC_4005.1	1162	2e-71	1 - 147	100	147 / 147	None	ABC08957
MLOC_23343.1	187	4e-64	54 - 187	100	134 / 134	None	ABC08957