barSeed - Barley Seed Development Database

Probe CUST_34627_PI390587928

Source Contig U35_13870

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34627_PI390587928	Hv_44K_v2	TATGGCCGCAGCACAAGGCAAGCTGAGTCCGGATGCCATCGACAACGAAGTCATCAGCAA	94	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355531	1278	2e-24	74 - 133	100	60 / 60	plus	ABC01222
MLOC	MLOC_44991.1	1447	2e-24	1149 - 1208	100	60 / 60	minus	ABC01222 ABC39980
JLOC1	JLOC1_29195.1	1332	8e-25	1095 - 1154	100	60 / 60	minus
Harvest35	U35_13870	501	3e-25	95 - 154	100	60 / 60	plus

Contig Sequence (501 bp)

>U35_13870 501 Hv_44K_v2
TCGAGCACTGTTGGCCTACTTGGCGTACCAATCTCCGCCACTGCAGATTAATCAGCTGAG
ATCGATCCATCGAGGAGCTAGCTAGCTTCATGACTATGGCCGCAGCACAAGGCAAGCTGA
GTCCGGATGCCATCGACAACGAAGTCATCAGCAACGGCAGCGCCAAGGACTACCTCGACC
CTCCTCCGGCGCCGCTGGTCGACGCCGGCGAGCTGGGCAAGTGGTCTCTGTACCGTGCCG
TCATCGCTGAGTTCACTGCCACGCTGCTCTTCGTCTACGTCGCCGTGGCCACCGTGGTCG
GACACAAGCGCCAGACCGACGCCCAGGCGTGCAGCGGCGCCGGCGTGCTGGGCATCGCGT
GGGCCTTCGGCGGCACGATCGCCGTCCTCGTCTACTGCACCGCCGGCATCTCCGGCGGCC
ACATCAACCCCGCGGTCACCTTCGGCCTCCTCCTGGCGCGCAAGGTCTCCCTTNCCAGGG
CCTTCCTGTACATGGTGGCGC

Homology of Contig U35_13870 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g26630.1	287	2e-58	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi1g28780.1	290	8e-59
Arabidopsis v10	AT3G54820.1	286	1e-54	\| Symbols: PIP2D, PIP2;5 \| plasma membrane intrinsic protein 2;5 \| chr3:20302117-20303738 FORWARD LENGTH=286