barSeed - Barley Seed Development Database

Probe CUST_34530_PI390587928

Source Contig U35_16056

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34530_PI390587928	Hv_44K_v2	AGAGGTGTAGCTGCAGCCTATCTCGGACAGTCGTAAAAACACTATATGCTTCTAGATTGC	878	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355741	2095	2e-24	1607 - 1666	100	60 / 60	plus	ABC04584 ABC04585 ABC04586
MLOC	MLOC_73924.3	1825	2e-24	1546 - 1605	100	60 / 60	plus	ABC04584 ABC04585 ABC04586
MLOC	MLOC_73924.2	1837	2e-24	1495 - 1554	100	60 / 60	plus	ABC04584 ABC04585 ABC04586
MLOC	MLOC_73924.1	2041	2e-24	1691 - 1750	100	60 / 60	plus	ABC04584 ABC04585 ABC04586
JLOC1	JLOC1_49243.1	2134	8e-25	1544 - 1603	100	60 / 60	plus
Harvest21	ABC04585	1293	3e-25	879 - 938	100	60 / 60	plus	ABC04585
Harvest21	ABC04584	628	3e-25	181 - 240	100	60 / 60	plus	ABC04584
Harvest35	U35_16056	1326	3e-25	879 - 938	100	60 / 60	plus

Contig Sequence (1326 bp)

>U35_16056 1326 Hv_44K_v2
GCCCACCACTACCCCGGCTGGGCCGGACGGTACCCCTACGGCCTCCAGCCGCCCATGCCC
ACGCCCTACGTCGAGCACCAGAAGGCCGTCACCATCCGCAACGACGTCAACCTCAAGAAG
GAGACGCTCCGGATTGAGCCTGATGAAGACTGTCCCGGCCGCTTCCTCGTCGCCTTCACC
TTCGATGCCACCGTCGCTGGAAGCATGACTGTCTACTTCTTTGCAAAGGAAGAGCTCAAC
TGCAATCTAACAGCGATGAAGCCAGACTTGATCAAGCCTGTTACTGTTAGCTTCAAAGAG
GGTCTTGGCCAGAAGTTTAGGCAACCTTCAGGGACAGGGATTGACTTCTCAGCGTTTGAG
GACTCTGAGTTGTTGAAACAGGGGGGGATGGAAATATATCCACTTGCAGTTAAAGCTGAA
ACAACATTATCTGCTGATCAACCATTGGAGGGGGAAGACCAGAAGCCAAAAACTCCAAAC
TCGCAGATCACACAGGCTGTGTTTGAGAAGAAAGAAAGTGGTGACTATCAAGTACGAGTT
GTTAGTCAGATCCTTTGGGTGAATGGCACCAGGTATGAATTGCAGGAAATATACGGGATA
GGAAATTCTGTGGAAGGGGACACTGATGCAAATGATCCTGGGAAAGAATGTGTTATCTGC
CTCTCAGAACCTAGGGATACTACTGTCCTTCCATGTAGGCATATGTGTATGTGCAGCGAG
TGCGCCAAGGTCCTGAGGTACCAGACCACCCGGTGCCCCATCTGCCGTCAGCCTGTGGAG
CGGCTGCTGGAGATCAAAGTCAACAACAAATCCGAAGAGCCGCCCCAGCAGACATCCCAG
TCGCCTCCGCTACCTCCACCCCCTGCTCTGCATCAGGAAGAGGTGTAGCTGCAGCCTATC
TCGGACAGTCGTAAAAACACTATATGCTTCTAGATTGCGGCCTTCGGGCCTTCCTCCCCT
GCAGGGTGCTCGCTTCGTTTGAGCAGACGGGATGTAACTGTTAAAACTTGTCTCAGTTAC
CTGTAGTGTATGTAAAGCATGTTGTAAAGCTTCTGGCATCACGAAGCGTGGCTCCGGCGG
GGAGCCCTGCAGATGCCGAGATGAGGACATCTGATACGTTCATGCGTGTGCTGTTGGCTA
GCTGAAGAAGTTTGCAGCAGGGTTGGGGGTGTGCCTCGTGCCTGCCCGGTTTCCTCTGTC
GGGGGAGGGGGGAAAGAAGCACGGAAGGTGCCTCCAGATTTGTACAAAGTCTCAGTAATT
TCTATCGTATCATAAATTTACCTTGAGGGTGACACATTTCTCTTCTCTGAAAAAAAAAAA
AAAAAA

Homology of Contig U35_16056 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g15000.1	431	5e-177	protein\|Zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi1g67780.1	406	0.0
Arabidopsis v10	AT3G09770.1	388	4e-125	RING/U-box superfamily protein \| chr3:2996402-2997835 REVERSE LENGTH=388